RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 DUX5Q96PT3 197 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 NMNAT2Q9BZQ4 307 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 SLC25A18Q9H1K4 315 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 SERTAD4Q9NUC0 356 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 LAMP3Q9UQV4 416 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 OTOGLQ3ZCN5 2332 aa9.52□□□□□ -0.89
CDH3-203ENST00000542274 EDNRAP25101 427 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 LRRC69Q6ZNQ3 347 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 IL22RA1Q8N6P7 574 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 TMEM217Q8N7C4 229 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 ZNF417Q8TAU3 575 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 RNF166Q96A37 237 aaPredicted RBP9.51□□□□□ -0.89
CDH3-203ENST00000542274 OR10C1Q96KK4 312 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 PRSS50Q9UI38 385 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP9.51□□□□□ -0.89
CDH3-203ENST00000542274 TNFRSF6BO95407 300 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 MEF2BQ02080 365 aaPredicted RBP9.51□□□□□ -0.89
CDH3-203ENST00000542274 ZNF92Q03936 586 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 CDK5R1Q15078 307 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 UFSP1Q6NVU6 142 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 ZNF418Q8TF45 676 aaPredicted RBP9.51□□□□□ -0.89
CDH3-203ENST00000542274 AMELYQ99218 206 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 ASCL2Q99929 193 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 SPATA25Q9BR10 227 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 TMEM242Q9NWH2 141 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 TMEM160Q9NX00 188 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 TRAPPC2LQ9UL33 140 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 VDAC3Q9Y277 283 aa9.51□□□□□ -0.89
CDH3-203ENST00000542274 AHCTF1Q8WYP5 2266 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 NTN3O00634 580 aaPredicted RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 HLA-AP01891 365 aaKnown RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 TTRP02766 147 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 HLA-DOBP13765 273 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 SIRPAP78324 504 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 RUNX1Q01196 453 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 PCK2Q16822 640 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 TMEM69Q5SWH9 247 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 STPG1Q5TH74 334 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 KLHDC1Q8N7A1 406 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 ZNF441Q8N8Z8 693 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 HSPB9Q9BQS6 159 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 PARLQ9H300 379 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 COL27A1Q8IZC6 1860 aaPredicted RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 NPIPB5A8MRT5 1133 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 H0YIZ8 118 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 TMEM42Q69YG0 159 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 DPY19L4Q7Z388 723 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 ANKRD37Q7Z713 158 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 DEFB125Q8N687 156 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 SMIM19Q96E16 107 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 UHRF2Q96PU4 802 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 DERL3Q96Q80 235 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 SRSF8Q9BRL6 282 aaKnown RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 SMDT1Q9H4I9 107 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 MBNL3Q9NUK0 354 aaKnown RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 CUL9Q8IWT3 2517 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 PCNX2A6NKB5 2137 aa9.5□□□□□ -0.89
CDH3-203ENST00000542274 COL5A1P20908 1838 aaPredicted RBP9.5□□□□□ -0.89
CDH3-203ENST00000542274 C1QTNF9BB2RNN3 333 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 PIN1P1O15428 100 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 BGLAPP02818 100 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 CELA2AP08217 269 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 F2RP25116 425 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 HLA-DRB3P79483 266 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 RPL24P83731 157 aaKnown RBP9.49□□□□□ -0.89
CDH3-203ENST00000542274 GGTLC2Q14390 218 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OR10AC1Q8NH08 325 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 CMTM2Q8TAZ6 248 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 C15orf40Q8WUR7 153 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 RCHY1Q96PM5 261 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 RASL10BQ96S79 203 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 GPX7Q96SL4 187 aaPredicted RBP9.49□□□□□ -0.89
CDH3-203ENST00000542274 TMEM204Q9BSN7 226 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 Q9N2K0 584 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 FBXL17Q9UF56 701 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 SDK2Q58EX2 2172 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 TEX48A0A1B0GUV7 120 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 DCDC2BA2VCK2 349 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 J3QR06 171 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 CDX4O14627 284 aaPredicted RBP9.49□□□□□ -0.89
CDH3-203ENST00000542274 PPP1CCP36873 323 aaKnown RBP9.49□□□□□ -0.89
CDH3-203ENST00000542274 SPEM2Q0P670 501 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 RAB32Q13637 225 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 ACTL10Q5JWF8 245 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 PLA2G2CQ5R387 149 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OR4F17Q8NGA8 305 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OR2AJ1Q8NGZ0 328 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OR5B3Q8NH48 314 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OR4F4Q96R69 305 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 ULBP3Q9BZM4 244 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 OBP2BQ9NPH6 170 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 AK3Q9UIJ7 227 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 LOC400499M0QZD8 3231 aa9.49□□□□□ -0.89
CDH3-203ENST00000542274 CNOT1A5YKK6 2376 aaKnown RBP9.48□□□□□ -0.89
CDH3-203ENST00000542274 TMED7-TICAM2A0A0A6YYA0 188 aa9.48□□□□□ -0.89
CDH3-203ENST00000542274 A0A1B0GW64 132 aa9.48□□□□□ -0.89
CDH3-203ENST00000542274 MAP1LC3B2A6NCE7 125 aa9.48□□□□□ -0.89
CDH3-203ENST00000542274 TCN2P20062 427 aa9.48□□□□□ -0.89
CDH3-203ENST00000542274 GUCA1AP43080 201 aaPredicted RBP9.48□□□□□ -0.89
CDH3-203ENST00000542274 TPPP2P59282 170 aa9.48□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms