RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 MRPL13Q9BYD1 178 aaKnown RBP8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 C12orf49Q9H741 205 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 NRN1Q9NPD7 142 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 FGF21Q9NSA1 209 aa8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 TBL2Q9Y4P3 447 aaKnown RBP8.11□□□□□ -1.11
CTNNA1-243ENST00000540387 PCNX2A6NKB5 2137 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 KNTC1P50748 2209 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 A0A1B0GV72 72 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 TMEM250H0YL14 139 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 H3BMH7 237 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 SLC33A1O00400 549 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF253O75346 499 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 PPIAL4GP0DN37 164 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 POU3F1Q03052 451 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 BAXQ07812 192 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 CXorf66Q5JRM2 361 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 ATOH7Q8N100 152 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 OR4N2Q8NGD1 307 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 OR51T1Q8NGJ9 327 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 OR1L3Q8NH93 324 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 MRPL30Q8TCC3 161 aaKnown RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF292O60281 2723 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 GVINP1Q7Z2Y8 2422 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 PHF1O43189 567 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 FOXS1O43638 330 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 TRAF3IP2O43734 574 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 RAMP3O60896 148 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 BLVRBP30043 206 aaPredicted RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 GFRA1P56159 465 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 TESK1Q15569 626 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 FER1L6-AS1Q8NA97 138 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 OR1N2Q8NGR9 330 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF286AQ9HBT8 521 aa8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 NXT1Q9UKK6 140 aaKnown RBP8.1□□□□□ -1.11
CTNNA1-243ENST00000540387 IGLV1-36A0A0B4J1U3 117 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 SERTM2A0A1B0GWG4 89 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 DPRXA6NFQ7 191 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 DLL1O00548 723 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 B3GALT2O43825 422 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 TNFSF15O95150 251 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 IFNA5P01569 189 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CT62P0C5K7 136 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CTLA4P16410 223 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 MSR1P21757 451 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CBLN1P23435 193 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CLDN15P56746 228 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 FXYD4P59646 89 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 FOXL1Q12952 345 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CNN3Q15417 329 aaKnown RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 SPIN3Q5JUX0 258 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM57BQ71RH2 274 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 ST6GALNAC3Q8NDV1 305 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 OR11L1Q8NGX0 322 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 ZNF501Q96CX3 271 aaPredicted RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 MCTS1Q9ULC4 181 aaKnown RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 DAPP1Q9UN19 280 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 CNOT1A5YKK6 2376 aaKnown RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM186AA6NE01 2351 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 C11orf98E9PRG8 122 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 NKX2-2O95096 273 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 VENTXO95231 258 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 TTRP02766 147 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 MDH2P40926 338 aaKnown RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 PSG9Q00887 426 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 EGR4Q05215 589 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 ZP4Q12836 540 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 WBP2NLQ6ICG8 309 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 OR5AS1Q8N127 324 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 FAM216AQ8WUB2 273 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 HDHD3Q9BSH5 251 aaPredicted RBP8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 OCIAD1Q9NX40 245 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 DMXL1Q9Y485 3027 aa8.09□□□□□ -1.11
CTNNA1-243ENST00000540387 PRSS37A4D1T9 235 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 FOXI3A8MTJ6 420 aaPredicted RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 C3orf79P0CE67 100 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ZNF10P21506 573 aaPredicted RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 AMTP48728 403 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 Q0VG73 95 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ABHD12BQ7Z5M8 362 aaPredicted RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 VASH2Q86V25 355 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 SELENOHQ8IZQ5 122 aaKnown RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 OR4F5Q8NH21 305 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 SGMS2Q8NHU3 365 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 C11orf40Q8WZ69 217 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 LHX4Q969G2 390 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ZNF48Q96MX3 618 aaPredicted RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 SIGLEC12Q96PQ1 595 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 RTN4RQ9BZR6 473 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 MRPL18Q9H0U6 180 aaKnown RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ARHGAP21Q5T5U3 1957 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 CFAP54Q96N23 3096 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 RAB29O14966 203 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 NRASP01111 189 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 KRASP01116 189 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ZNF20P17024 532 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ANOS1P23352 680 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 MC5RP33032 325 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 OR1D4P47884 311 aa8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ZNF133P52736 654 aaPredicted RBP8.08□□□□□ -1.12
CTNNA1-243ENST00000540387 ACSF3Q4G176 576 aaPredicted RBP8.08□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms