RNA–Protein interactions for RNA: ENST00000540230.5

UBE3B-212, Transcript of ubiquitin protein ligase E3B, humanhuman

TSL 1 (best) BASIC

Gene UBE3B, Length 1,541 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3B-212ENST00000540230 RITA1Q96K30 269 aa11.92□□□□□ -0.5
UBE3B-212ENST00000540230 C11orf54Q9H0W9 315 aaPredicted RBP11.92□□□□□ -0.5
UBE3B-212ENST00000540230 IGKV1D-8A0A087WSZ0 117 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 METTL21EPA6NDL7 271 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 TRIM64CA6NLI5 447 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 TRDCB7Z8K6 153 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 PROP1O75360 226 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 GSTT2P0CG29 244 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 GSTT2BP0CG30 244 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 ZBTB25P24278 435 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 CNTFRP26992 372 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 CD83Q01151 205 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 IGSF11Q5DX21 431 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 MGAT4AQ9UM21 535 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 FABP7O15540 132 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 HSPA12AO43301 675 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 IGHG2P01859 326 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 LSM3P62310 102 aaKnown RBP11.91□□□□□ -0.5
UBE3B-212ENST00000540230 GLDNQ6ZMI3 551 aaPredicted RBP11.91□□□□□ -0.5
UBE3B-212ENST00000540230 ZNF329Q86UD4 541 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 FAM71E2Q8N5Q1 922 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 SLC25A38Q96DW6 304 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 S1PR3Q99500 378 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 HSPB9Q9BQS6 159 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 ABCG5Q9H222 651 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 PIPOXQ9P0Z9 390 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 RNF150Q9ULK6 438 aa11.91□□□□□ -0.5
UBE3B-212ENST00000540230 A0A1W2PRX2 142 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 SERPINE3A8MV23 424 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 ITGB1BP1O14713 200 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 RAB29O14966 203 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 CT45A6P0DMU7 189 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 CT45A5P0DMU8 189 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 CT45A7P0DMV0 189 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 LINC00205P59089 165 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 MRPS15P82914 257 aaKnown RBP11.9□□□□□ -0.5
UBE3B-212ENST00000540230 ARFRP1Q13795 201 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 CDNFQ49AH0 187 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 IDNKQ5T6J7 187 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 SLC35E3Q7Z769 313 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 NDUFA11Q86Y39 141 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 OR4A4PQ8NGN8 299 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 CABLES2Q9BTV7 478 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP11.9□□□□□ -0.5
UBE3B-212ENST00000540230 LIN7CQ9NUP9 197 aaKnown RBP11.9□□□□□ -0.5
UBE3B-212ENST00000540230 RHBDL2Q9NX52 303 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 RDH8Q9NYR8 311 aa11.9□□□□□ -0.5
UBE3B-212ENST00000540230 TMEM235A6NFC5 223 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 BET1O15155 118 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 AIREO43918 545 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 SMIM18P0DKX4 95 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 GPR12P47775 334 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 ACTBP60709 375 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 FAM71F2Q6NXP2 309 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 FAM131AQ6UXB0 335 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 NUDCD2Q8WVJ2 157 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 EDARADDQ8WWZ3 215 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 NOTCH1P46531 2555 aa11.89□□□□□ -0.51
UBE3B-212ENST00000540230 PSMB11A5LHX3 300 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 MMDQ15546 238 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 ZNF260Q3ZCT1 412 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 DRAXINQ8NBI3 349 aaPredicted RBP11.88□□□□□ -0.51
UBE3B-212ENST00000540230 R3HDM4Q96D70 268 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 TOLLIPQ9H0E2 274 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 VCX3AQ9NNX9 186 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 PRKDCP78527 4128 aaKnown RBP11.88□□□□□ -0.51
UBE3B-212ENST00000540230 PLXNB1O43157 2135 aa11.88□□□□□ -0.51
UBE3B-212ENST00000540230 TRBV6-7A0A0A0MS04 114 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 H0YJW9 148 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 SSX5O60225 188 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 RPS19P39019 145 aaKnown RBP11.87□□□□□ -0.51
UBE3B-212ENST00000540230 KIR2DS1Q14954 304 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 TIMM50Q3ZCQ8 353 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 HACD4Q5VWC8 232 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 STPG2Q8N412 459 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 OR4X2Q8NGF9 303 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 OR8H1Q8NGG4 311 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 C5orf30Q96GV9 206 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 RASL11BQ9BPW5 248 aa11.87□□□□□ -0.51
UBE3B-212ENST00000540230 TCRBV4S1A1TA0A5B7 111 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 KCNAB3O43448 404 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 OPN1MWP04001 364 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 OPN1MW2P0DN77 364 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 OPN1MW3P0DN78 364 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 TALDO1P37837 337 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 Q6ZS49 121 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 C1QL4Q86Z23 238 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 FUNDC2Q9BWH2 189 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 ETV7Q9Y603 341 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 DNAH3Q8TD57 4116 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 GSTP1P09211 210 aaKnown RBP11.86□□□□□ -0.51
UBE3B-212ENST00000540230 OR8U9P0C7N5 309 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 DTYMKP23919 212 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 SERPINB10P48595 397 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 SCAND1P57086 179 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 NCS1P62166 190 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 SRSF7Q16629 238 aaKnown RBP eCLIP11.86□□□□□ -0.51
UBE3B-212ENST00000540230 KHDC1LQ5JSQ8 128 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 C18orf65Q6ZTR6 163 aa11.86□□□□□ -0.51
UBE3B-212ENST00000540230 FOXRED2Q8IWF2 684 aa11.86□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms