RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-238ENST00000534296 HSP90B2PQ58FF3 399 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 HES3Q5TGS1 186 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 SDIM1Q6ZPB5 146 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 SLC51BQ86UW2 128 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 BOD1L2Q8IYS8 172 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 BLIDQ8IZY5 108 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 OR11H1Q8NG94 326 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 C16orf78Q8WTQ4 265 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 ZCCHC13Q8WW36 166 aaKnown RBP1.22□□□□□ -2.21
CD44-238ENST00000534296 C12orf43Q96C57 262 aaKnown RBP1.22□□□□□ -2.21
CD44-238ENST00000534296 MIEN1Q9BRT3 115 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 TIPINQ9BVW5 301 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 TMEM106BQ9NUM4 274 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 PARVAQ9NVD7 372 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 NDUFB11Q9NX14 153 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 HEY1Q9Y5J3 304 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 ABCA2Q9BZC7 2435 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 PTPN13Q12923 2485 aa1.22□□□□□ -2.21
CD44-238ENST00000534296 NACADO15069 1562 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 CEP170Q5SW79 1584 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ADAMTSL1Q8N6G6 1762 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 PTPRJQ12913 1337 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 NAV2Q8IVL1 2488 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 VPS37CA5D8V6 355 aaPredicted RBP1.21□□□□□ -2.22
CD44-238ENST00000534296 KNCNA6PVL3 124 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 FTCDNL1E5RQL4 147 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 LY6LH3BQJ8 138 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 SMLR1H3BR10 107 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 J3QKU1 62 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 CD7P09564 240 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 P0DMU3 169 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 FAM231AP0DMU4 169 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 FAM231CP0DMU5 169 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 OR13C7P0DN81 318 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 CD36P16671 472 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 PSMB6P28072 239 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 BLVRBP30043 206 aaPredicted RBP1.21□□□□□ -2.22
CD44-238ENST00000534296 GRPRP30550 384 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ALDH3A1P30838 453 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 CA7P43166 264 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 MAP3K7CLP57077 242 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 SKP1P63208 163 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 TBC1D28Q2M2D7 210 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 MRPL51Q4U2R6 128 aaKnown RBP1.21□□□□□ -2.22
CD44-238ENST00000534296 XKRXQ6PP77 449 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 AMTNQ6UX39 209 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ATP5L2Q7Z4Y8 100 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ZNF567Q8N184 647 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ZFAND2AQ8N6M9 145 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 OR5L1Q8NGL2 311 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 ACY3Q96HD9 319 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 DNAJC30Q96LL9 226 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 TBX5Q99593 518 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 GPR22Q99680 433 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 BBS2Q9BXC9 721 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 MROQ9BYG7 248 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 FKBP14Q9NWM8 211 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 HHLA2Q9UM44 414 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 DOCK6Q96HP0 2047 aa1.21□□□□□ -2.22
CD44-238ENST00000534296 SHANK3Q9BYB0 1731 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 ZNF638Q14966 1978 aaKnown RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 A0A0A6YYH2 397 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 A0A1W2PQL4 384 aaPredicted RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 TMEM235A6NFC5 223 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 A6NJ64 397 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 C2orf74A8MZ97 194 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 H3BPC8 53 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 J3QLI3 93 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 TXNDC9O14530 226 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 OVOL1O14753 267 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 CETN3O15182 167 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 LY6HO94772 140 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 UCHL1P09936 223 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 GZMBP10144 247 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 ZNF7P17097 686 aaPredicted RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 CDK2P24941 298 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 CD40LGP29965 261 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 HSPA9P38646 679 aaKnown RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 CDK9P50750 372 aaKnown RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 H2BFSP57053 126 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 LRRC26Q2I0M4 334 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 HLA-DRB5Q30154 266 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 PDPK2PQ6A1A2 396 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 PLCZ1Q86YW0 608 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 FUNDC1Q8IVP5 155 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 TMEM75Q8N9X5 138 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 OR7G1Q8NGA0 311 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 OR4X2Q8NGF9 303 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 OR2D3Q8NGH3 330 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 LHFPL5Q8TAF8 219 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 Q8WTZ3 238 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 MS4A6EQ96DS6 147 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 CMTM5Q96DZ9 223 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 DHRS9Q9BPW9 319 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 TXNDC17Q9BRA2 123 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 NKX6-2Q9C056 277 aaPredicted RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 FAM96AQ9H5X1 160 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 SLC2A9Q9NRM0 540 aa1.2□□□□□ -2.22
CD44-238ENST00000534296 ZNHIT6Q9NWK9 470 aaKnown RBP1.2□□□□□ -2.22
CD44-238ENST00000534296 EURLQ9NYK6 297 aa1.2□□□□□ -2.22
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms