RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 HMOX2P30519 316 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 NDUFA8P51970 172 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 WNT4P56705 351 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 DYNLT1P63172 113 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 SARNPP82979 210 aaKnown RBP2.42□□□□□ -2.02
CD44-235ENST00000532339 H3F3AP84243 136 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 MXD1Q05195 221 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 PMS2P3Q13401 168 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 ZNF726P1Q15940 193 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 RFX4Q33E94 735 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 OR52W1Q6IF63 320 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 LYPD2Q6UXB3 125 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 CPNE9Q8IYJ1 553 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 STPG2Q8N412 459 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 OR9G4Q8NGQ1 327 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 OR52E5Q8NH55 327 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 LYPD6BQ8NI32 183 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 C17orf50Q8WW18 174 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 TNFRSF14Q92956 283 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 QKIQ96PU8 341 aaKnown RBP eCLIP2.42□□□□□ -2.02
CD44-235ENST00000532339 ECSITQ9BQ95 431 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 BCL7BQ9BQE9 202 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 TMED9Q9BVK6 235 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 FRMD8P1Q9BZ68 369 aaPredicted RBP2.42□□□□□ -2.02
CD44-235ENST00000532339 LINC00470Q9BZP3 86 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 BCL2L14Q9BZR8 327 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 TUBG2Q9NRH3 451 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 MRPL22Q9NWU5 206 aaKnown RBP2.42□□□□□ -2.02
CD44-235ENST00000532339 ST3GAL6Q9Y274 331 aa2.42□□□□□ -2.02
CD44-235ENST00000532339 A0A0A6YYD5 115 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 K7EMT4 169 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CCRL2O00421 344 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 TGOLN2O43493 480 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 EIF1BO60739 113 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 RAB36O95755 333 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 IGLV2-23P01705 113 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 BGLAPP02818 100 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 IFNA4P05014 189 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CD79AP11912 226 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CTRB1P17538 263 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 GPX4P36969 197 aaPredicted RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 PMELP40967 661 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 KIR3DL2P43630 455 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 RAP1GDS1P52306 607 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CRISP3P54108 245 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ERVS71-1P61550 626 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CRADDP78560 199 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 PRB3Q04118 309 aaPredicted RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 KLRD1Q13241 179 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CLINT1Q14677 625 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 DEFB136Q30KP8 78 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ZBED5Q49AG3 693 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ATP6AP1LQ52LC2 224 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 COA6Q5JTJ3 125 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 CAMK2N1Q7Z7J9 78 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CMC1Q7Z7K0 106 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 LYG2Q86SG7 212 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 LINC00523Q86TU6 105 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 MICU2Q8IYU8 434 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 OTUD6BQ8N6M0 293 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 C8orf31Q8N9H6 132 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ZIC4Q8N9L1 334 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 GATSQ8NAP1 163 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 OR6X1Q8NH79 312 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ZNF675Q8TD23 568 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CD200R1Q8TD46 325 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 GPX8Q8TED1 209 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 TMEM106AQ96A25 262 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 SERPINB12Q96P63 405 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 EFCAB11Q9BUY7 163 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 ACTR3CQ9C0K3 210 aaPredicted RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 IQCGQ9H095 443 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 OR51B6Q9H340 312 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 TAS2R9Q9NYW1 312 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 CCDC59Q9P031 241 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 RPS6KB2Q9UBS0 482 aa2.41□□□□□ -2.02
CD44-235ENST00000532339 PEF1Q9UBV8 284 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 CHTOPQ9Y3Y2 248 aaKnown RBP2.41□□□□□ -2.02
CD44-235ENST00000532339 A0A1W2PQD3 144 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 LYRM9A8MSI8 78 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 XKRYO14609 159 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 SUPT3HO75486 399 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 SNAP29O95721 258 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CYB5R3P00387 301 aaPredicted RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 PDYNP01213 254 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 P0DMU3 169 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 FAM231AP0DMU4 169 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 FAM231CP0DMU5 169 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CT45A6P0DMU7 189 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CT45A5P0DMU8 189 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CT45A7P0DMV0 189 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 PAX6P26367 422 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 FKBP2P26885 142 aaKnown RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 SERPINB1P30740 379 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 P2RX1P51575 399 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 ZNF133P52736 654 aaPredicted RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 EIF3EP60228 445 aaKnown RBP2.4□□□□□ -2.03
CD44-235ENST00000532339 RAB11AP62491 216 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 ZNF117Q03924 483 aa2.4□□□□□ -2.03
CD44-235ENST00000532339 CKAP4Q07065 602 aaKnown RBP2.4□□□□□ -2.03
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms