RNA–Protein interactions for RNA: ENST00000504627.1

SQSTM1-209, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 602 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-209ENST00000504627 MALSU1Q96EH3 234 aa14.54□□□□□ -0.08
SQSTM1-209ENST00000504627 RANBP3Q9H6Z4 567 aaPredicted RBP14.54□□□□□ -0.08
SQSTM1-209ENST00000504627 KIF25Q9UIL4 384 aa14.54□□□□□ -0.08
SQSTM1-209ENST00000504627 LINC00312Q9Y6C7 94 aa14.54□□□□□ -0.08
SQSTM1-209ENST00000504627 SLC6A1P30531 599 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 RFX2P48378 723 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 RAB13P51153 203 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 ARPC4P59998 168 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 AESQ08117 197 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 TRIM16LQ309B1 348 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 ZNF626Q68DY1 528 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 C11orf88Q6PI97 169 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 ARRDC1Q8N5I2 433 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 OR11H6Q8NGC7 330 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 FAM110DQ8TAY7 271 aaPredicted RBP14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 PIFOQ8TCI5 191 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 TINAGL1Q9GZM7 467 aaPredicted RBP14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 MCUBQ9NWR8 336 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 SLC2A8Q9NY64 477 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 COPZ2Q9P299 210 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 TRAPPC2LQ9UL33 140 aa14.53□□□□□ -0.08
SQSTM1-209ENST00000504627 IGKV1D-8A0A087WSZ0 117 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 MEIKINA0A087WXM9 373 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 FAM240BA0A1B0GVZ2 78 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 ODAMA1E959 279 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 VGLL3A8MV65 326 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 ODF3BA8MYP8 253 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 TRDCB7Z8K6 153 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 DISC1C4P0D8 188 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 FABP7O15540 132 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 DIRAS3O95661 229 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 OR3A3P47888 321 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 HERPUD1Q15011 391 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 CDK10Q15131 360 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 HMGN3Q15651 99 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 KIAA2026Q5HYC2 2103 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 FAAP20Q6NZ36 180 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 NRARPQ7Z6K4 114 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 DYNAPQ8N1N2 210 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 OR4D10Q8NGI6 311 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 PRRT1Q99946 306 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 NECAP2Q9NVZ3 263 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 OR6C3Q9NZP0 311 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 PITPNC1Q9UKF7 332 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 SESN1Q9Y6P5 492 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 VWFP04275 2813 aa14.52□□□□□ -0.09
SQSTM1-209ENST00000504627 M0QYG6 137 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 CHST1O43916 411 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 TSPAN15O95858 294 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 AMY2AP04746 511 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 CTXN2P0C2S0 81 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 TCF23Q7RTU1 214 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 CENPSQ8N2Z9 138 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 KLHDC1Q8N7A1 406 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 OR4A4PQ8NGN8 299 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 CABLES2Q9BTV7 478 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 ING3Q9NXR8 418 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 EHFQ9NZC4 300 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 KCNIP1Q9NZI2 227 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 SCP2D1Q9UJQ7 156 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 TCF19Q9Y242 345 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 HILPDAQ9Y5L2 63 aa14.51□□□□□ -0.09
SQSTM1-209ENST00000504627 TRGV10A0A0A0MS01 117 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 IGHV2-26A0A0B4J1V2 119 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 PMP2P02689 132 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 IFNA6P05013 189 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 ZNF735P0CB33 412 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 VSIG10L2P0DP72 767 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 RCC1P18754 421 aaPredicted RBP14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 GLP1RP43220 463 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 GLIPR1P48060 266 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 PDLIM3Q53GG5 364 aaPredicted RBP14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 OVCH2Q7RTZ1 564 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 TMEM17Q86X19 198 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 C11orf44Q8N8P7 122 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 DUSP18Q8NEJ0 188 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 OR56B4Q8NH76 319 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 TMEM133Q9H2Q1 129 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 GAL3ST2Q9H3Q3 398 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 RAB9BQ9NP90 201 aa14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 UBE2J1Q9Y385 318 aaPredicted RBP14.5□□□□□ -0.09
SQSTM1-209ENST00000504627 NPIPB11E5RHQ5 1161 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 F2RL2O00254 374 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 RBMS2Q15434 407 aaKnown RBP14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 ARSJQ5FYB0 599 aaPredicted RBP14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 MINOS1Q5TGZ0 78 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 TMEM219Q86XT9 240 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 OR51S1Q8NGJ8 323 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 OR13A1Q8NGR1 328 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 CCDC107Q8WV48 283 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 CLEC7AQ9BXN2 247 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 MINOS1-NBL1R4GNA1 71 aa14.49□□□□□ -0.09
SQSTM1-209ENST00000504627 A6NDX4 124 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 PEX14O75381 377 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 GSTT2P0CG29 244 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 OR5H8P0DN80 308 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 LDLRAD2Q5SZI1 272 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 PLET1Q6UQ28 207 aa14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 CCBE1Q6UXH8 406 aaPredicted RBP14.48□□□□□ -0.09
SQSTM1-209ENST00000504627 MRGPRDQ8TDS7 321 aa14.48□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms