RNA–Protein interactions for RNA: ENST00000497849.1

VIM-208, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 634 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-208ENST00000497849 PLPPR1Q8TBJ4 325 aa12.62□□□□□ -0.39
VIM-208ENST00000497849 RHOFQ9HBH0 211 aa12.62□□□□□ -0.39
VIM-208ENST00000497849 C12orf77C9JDV5 145 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 SLC22A1O15245 554 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 SULT1B1O43704 296 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 SLC25A17O43808 307 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 LY6G6CO95867 125 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 LGALS1P09382 135 aaKnown RBP12.61□□□□□ -0.39
VIM-208ENST00000497849 RAB3AP20336 220 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 GALP22466 123 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 CNPY1Q3B7I2 92 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 PAN3Q58A45 887 aaKnown RBP12.61□□□□□ -0.39
VIM-208ENST00000497849 MINDY2Q8NBR6 621 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 SPSB1Q96BD6 273 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 BARHL1Q9BZE3 327 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 HIPK2Q9H2X6 1198 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 RNF167Q9H6Y7 350 aa12.61□□□□□ -0.39
VIM-208ENST00000497849 TRAV41A0A0B4J266 112 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 TRDV1A0A1B0GX56 115 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 SOX15O60248 233 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 UCHL1P09936 223 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 BDKRB2P30411 391 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 VBP1P61758 197 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 NCS1P62166 190 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 PPP3R1P63098 170 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 PAX5Q02548 391 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 HSD17B12Q53GQ0 312 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 C22orf42Q6IC83 251 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 CD200R1LQ6Q8B3 271 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 LRRTM1Q86UE6 522 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 SAXO1Q8IYX7 474 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 CASTOR1Q8WTX7 329 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 CENPOQ9BU64 300 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 PARP11Q9NR21 331 aa12.6□□□□□ -0.39
VIM-208ENST00000497849 MRPS28Q9Y2Q9 187 aaKnown RBP12.6□□□□□ -0.39
VIM-208ENST00000497849 IGHV7-81A0A0B4J1V7 117 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 SHISA3A0PJX4 238 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 DDI2Q5TDH0 399 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 C8orf31Q8N9H6 132 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 NABP2Q9BQ15 211 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 THAP7Q9BT49 309 aaPredicted RBP12.59□□□□□ -0.39
VIM-208ENST00000497849 TMEM138Q9NPI0 162 aa12.59□□□□□ -0.39
VIM-208ENST00000497849 TXNL4BQ9NX01 149 aaKnown RBP12.59□□□□□ -0.39
VIM-208ENST00000497849 C15orf65H3BRN8 121 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 SLC31A2O15432 143 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 HLA-DRB1P01911 266 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 SRMP19623 302 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 FSTP19883 344 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 MAPK3P27361 379 aaPredicted RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 CALRP27797 417 aaKnown RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 BLVRBP30043 206 aaPredicted RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 FGF9P31371 208 aaPredicted RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 TGFBR1P36897 503 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 SPCS2Q15005 226 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 MMDQ15546 238 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 KISS1Q15726 138 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 C19orf54Q5BKX5 351 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 LINC00322Q6ZN03 302 aaPredicted RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 OR52M1Q8NGK5 317 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 UBALD1Q8TB05 177 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 RITA1Q96K30 269 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 GPER1Q99527 375 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 GFI1Q99684 422 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 RSRP1Q9BUV0 290 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 NEK6Q9HC98 313 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 CKLFQ9UBR5 152 aa12.58□□□□□ -0.4
VIM-208ENST00000497849 AK6Q9Y3D8 172 aaKnown RBP12.58□□□□□ -0.4
VIM-208ENST00000497849 SMIM30A4D0T7 59 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 MAGEB3O15480 346 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 HSPB1P04792 205 aaKnown RBP12.57□□□□□ -0.4
VIM-208ENST00000497849 TMEM225BP0DP42 221 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 IL3RAP26951 378 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 SERPINB10P48595 397 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 ELOVL1Q9BW60 279 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 TUBA4BQ9H853 241 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 GFOD1Q9NXC2 390 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 ING4Q9UNL4 249 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 FBXO7Q9Y3I1 522 aa12.57□□□□□ -0.4
VIM-208ENST00000497849 IGHV3-43A0A0B4J1X8 118 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 A0A1W2PN81 502 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 SDCBPO00560 298 aaPredicted RBP12.56□□□□□ -0.4
VIM-208ENST00000497849 TXNL1O43396 289 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 IGHV3-11P01762 117 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 CLEC2LP0C7M8 214 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 IGHV3-43DP0DP04 118 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 ZNF93P35789 620 aaPredicted RBP12.56□□□□□ -0.4
VIM-208ENST00000497849 CHRNA7P36544 502 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 ZNF137PP52743 207 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 NDPQ00604 133 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 ELP2Q6IA86 826 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 SLC25A48Q6ZT89 311 aaKnown RBP12.56□□□□□ -0.4
VIM-208ENST00000497849 RPP25LQ8N5L8 163 aaKnown RBP12.56□□□□□ -0.4
VIM-208ENST00000497849 JAGN1Q8N5M9 183 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 OR10K1Q8NGX5 313 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 TNFAIP8L1Q8WVP5 186 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 PHYHIPQ92561 330 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 THRSPQ92748 146 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 FLYWCH2Q96CP2 140 aaKnown RBP12.56□□□□□ -0.4
VIM-208ENST00000497849 DCUN1D5Q9BTE7 237 aa12.56□□□□□ -0.4
VIM-208ENST00000497849 DCSTAMPQ9H295 470 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms