RNA–Protein interactions for RNA: ENST00000496826.1

USF3-204, Transcript of upstream transcription factor family member 3, humanhuman

TSL 1 (best)

Gene USF3, Length 8,397 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-204ENST00000496826 CDC42EP2O14613 210 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 SNAI1O95863 264 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 LHX2P50458 406 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 NGFP01138 241 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 NOVP48745 357 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 PDLIM4P50479 330 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 Q6ZVU0 165 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 C1orf210Q8IVY1 113 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 TMEM160Q9NX00 188 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 LOC107986453A0A1B0GWG9 222 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 TBX6O95947 436 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 FGF8P55075 233 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 FAM156AQ8NDB6 213 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 PFN4Q8NHR9 129 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 EGLN2Q96KS0 407 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 OTOFQ9HC10 1997 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 TRGV4A0A0C4DH28 118 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 FGF17O60258 216 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 OR2H2O95918 312 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 RPL34P49207 117 aaKnown RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 PITX1P78337 314 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 SAMD5Q5TGI4 173 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 ZAR1Q86SH2 424 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 LAX1Q8IWV1 398 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 GCSAMQ8N6F7 178 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 THAP8Q8NA92 274 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 TM4SF19Q96DZ7 209 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 WDYHV1Q96HA8 205 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 RSPO3Q9BXY4 272 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 H0YIG0 161 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 LINC00158P58513 81 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 PRNTQ86SH4 94 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 SLC25A37Q9NYZ2 338 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 HES2Q9Y543 173 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 FANCMQ8IYD8 2048 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 KRBA1A5PL33 1030 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 CYB5R3P00387 301 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 PNLIPP16233 465 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 DSCR4P56555 118 aaPredicted RBP5.11□□□□□ -1.59
USF3-204ENST00000496826 SOX8P57073 446 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 LINC00518Q8N0U6 118 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 CYB5D2Q8WUJ1 264 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 TMEM54Q969K7 222 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 LINC01587Q99440 93 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 EMC6Q9BV81 110 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 CLEC2DQ9UHP7 191 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 RNF11Q9Y3C5 154 aa5.11□□□□□ -1.59
USF3-204ENST00000496826 hADV29S1A0JD25 119 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ZNF561-AS1K7EIQ3 104 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 GCM2O75603 506 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 TCRAP04437 139 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ELNP15502 786 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 PMP22Q01453 160 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 GATD1Q8NB37 220 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CT55Q8WUE5 264 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 OR5P3Q8WZ94 311 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ASCL2Q99929 193 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 R4GMQ9 66 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ATP7AQ04656 1500 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 PAX4O43316 350 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 RNF224P0DH78 156 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MFAP2P55001 183 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ECM1Q16610 540 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 NPNTQ6UXI9 565 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 PTPMT1Q8WUK0 201 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 MPDZO75970 2070 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CROCC2H7BZ55 1655 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 A0A1W2PP55 124 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 NPIPB4C9JG80 1138 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 FAM74A4Q5TZK3 123 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 TRBV20OR9-2A0A075B6H5 130 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 IGKV3OR2-268A0A0C4DH90 116 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 NBL1P41271 181 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 KLRD1Q13241 179 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CDCA4Q9BXL8 241 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 EP300Q09472 2414 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 IGHV3OR16-12A0A075B7B8 117 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MBLAC1A4D2B0 266 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 POM121BA6NF01 834 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MBNL2Q5VZF2 373 aaKnown RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 TEX36Q5VZQ5 186 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MS4A4AQ96JQ5 239 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ZNF319Q9P2F9 582 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ZNF257Q9Y2Q1 563 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 LAMC3Q9Y6N6 1575 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 TRBV20-1A0A075B6N2 111 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 MYMXA0A1B0GTQ4 84 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 NRG2O14511 850 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 TMPRSS2O15393 492 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CGB3P0DN86 165 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CD27P26842 260 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 SLAQ13239 276 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ZNF678Q5SXM1 525 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 ZNF362Q5T0B9 420 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 COMMD6Q7Z4G1 85 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 H1FOOQ8IZA3 346 aaPredicted RBP5.1□□□□□ -1.59
USF3-204ENST00000496826 SLC37A2Q8TED4 501 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 KIF20BQ96Q89 1820 aa5.1□□□□□ -1.59
USF3-204ENST00000496826 CDC42BPAQ5VT25 1732 aa5.1□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms