RNA–Protein interactions for RNA: ENST00000494123.5

BRCA1-223, Transcript of BRCA1, DNA repair associated, human

TSL 1 (best)

Gene BRCA1, Length 1,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
BRCA1-223	ENST00000494123	ZNF107	Q9UII5	783 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	ZNF221	Q9UK13	617 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	RNF150	Q9ULK6	438 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	OOSP1	A8MZH6	123 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	LY6L	H3BQJ8	138 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123		J3QRK9	145 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123		M0QYG6	137 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	RAB29	O14966	203 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	CD3D	P04234	171 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	IFNA6	P05013	189 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	TBP	P20226	339 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	GPR12	P47775	334 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	LUM	P51884	338 aa	Predicted RBP	11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	FAM216A	Q8WUB2	273 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	ABHD14B	Q96IU4	210 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	S1PR3	Q99500	378 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	OR2D2	Q9H210	308 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	AKIP1	Q9NQ31	210 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	ABCB10	Q9NRK6	738 aa		11.78	□□□□□ -0.52
BRCA1-223	ENST00000494123	SAA2-SAA4	A0A096LPE2	208 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	LANCL1	O43813	399 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	RAB3D	O95716	219 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	IFNA2	P01563	188 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	GAPDH	P04406	335 aa	Known RBP	11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	SAA2	P0DJI9	122 aa	Predicted RBP	11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	REG1B	P48304	166 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	INPP1	P49441	399 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	HERV-K104	P61576	105 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	BAMBI	Q13145	260 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	DIAPH2-AS1	Q14236	149 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	STEAP1B	Q6NZ63	245 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	TMEM17	Q86X19	198 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	TGIF2LX	Q8IUE1	241 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	DYNAP	Q8N1N2	210 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	OR6F1	Q8NGZ6	308 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	AGMAT	Q9BSE5	352 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF2	Q9BSG1	426 aa	Predicted RBP	11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	MEGF9	Q9H1U4	602 aa		11.77	□□□□□ -0.53
BRCA1-223	ENST00000494123	BTBD17	A6NE02	478 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	TXNL1	O43396	289 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	TUSC2	O75896	110 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	PPY	P01298	95 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	AKAIN1	P0CW23	69 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	AADAC	P22760	399 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	BRS3	P32247	399 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF137P	P52743	207 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	AP3S2	P59780	193 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF816	Q0VGE8	651 aa	Predicted RBP	11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	LRRC75B	Q2VPJ9	315 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	VAX1	Q5SQQ9	334 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	TRIQK	Q629K1	86 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123		Q6YL49	198 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	LDLRAD3	Q86YD5	345 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ODF3L1	Q8IXM7	274 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	MFSD4A	Q8N468	514 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	TOMM5	Q8N4H5	51 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	GIMAP1	Q8WWP7	306 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	RTN4IP1	Q8WWV3	396 aa	Predicted RBP	11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ST6GALNAC6	Q969X2	333 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	SSX3	Q99909	188 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	TINAGL1	Q9GZM7	467 aa	Predicted RBP	11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	PRDM13	Q9H4Q3	707 aa		11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ANK3	Q12955	4377 aa	Known RBP	11.76	□□□□□ -0.53
BRCA1-223	ENST00000494123	ANKRD20A5P	A0PJZ0	165 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	HOXA3	O43365	443 aa	Predicted RBP	11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	TCF21	O43680	179 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	CD74	P04233	296 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	FXYD4	P59646	89 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	MEF2D	Q14814	521 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	RPL39P5	Q59GN2	51 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF57	Q68EA5	555 aa	Predicted RBP	11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	DHRS11	Q6UWP2	260 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	MOB3B	Q86TA1	216 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	OR8H3	Q8N146	312 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	SSMEM1	Q8WWF3	244 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	TRIM63	Q969Q1	353 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	JMJD8	Q96S16	334 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	WDR12	Q9GZL7	423 aa	Known RBP	11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	DPAGT1	Q9H3H5	408 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	NIPBL	Q6KC79	2804 aa	eCLIP	11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	IGHV1-3	A0A0C4DH29	117 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123		H3BUX3	64 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	AMY2A	P04746	511 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	IER3	P46695	156 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF846	Q147U1	533 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	AANAT	Q16613	207 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	TUSC1	Q2TAM9	212 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	FAM71F2	Q6NXP2	309 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF833P	Q6ZTB9	187 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	ARRDC1	Q8N5I2	433 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	ZNF436-AS1	Q8NC38	126 aa	Predicted RBP	11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	OR4D10	Q8NGI6	311 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	SECTM1	Q8WVN6	248 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	TNFRSF19	Q9NS68	423 aa		11.75	□□□□□ -0.53
BRCA1-223	ENST00000494123	IGKV1D-13	A0A0B4J2D9	117 aa		11.74	□□□□□ -0.53
BRCA1-223	ENST00000494123		A0A1W2PPI3	338 aa		11.74	□□□□□ -0.53
BRCA1-223	ENST00000494123	VGLL3	A8MV65	326 aa		11.74	□□□□□ -0.53
BRCA1-223	ENST00000494123	DISC1	C4P0D8	188 aa		11.74	□□□□□ -0.53
BRCA1-223	ENST00000494123	TIMM23	O14925	209 aa		11.74	□□□□□ -0.53
BRCA1-223	ENST00000494123	SLC22A5	O76082	557 aa		11.74	□□□□□ -0.53

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