RNA–Protein interactions for RNA: ENST00000485450.5

USP4-211, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2

Gene USP4, Length 3,541 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-211ENST00000485450 RHBDD3Q9Y3P4 386 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 MEGF11A6BM72 1044 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 C17orf51A8MQB3 221 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 ZNF705FA8MVS1 300 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 CORTO00230 105 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 MT-ATP6P00846 226 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 CTSDP07339 412 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 ZNF705DP0CH99 300 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 ZNF705BP0CI00 300 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 RNPS1Q15287 305 aaKnown RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 C3AR1Q16581 482 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 ACOT6Q3I5F7 207 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 FAM90A2PQ658T7 463 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 KLHL24Q6TFL4 600 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 LHFPL1Q86WI0 220 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 LYPD6Q86Y78 171 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 Q8N976 141 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 CLDND2Q8NHS1 167 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 FAM46BQ96A09 425 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 GMPPAQ96IJ6 420 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 IMMP2LQ96T52 175 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 CHODLQ9H9P2 273 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 C1orf123Q9NWV4 160 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 LSM5Q9Y4Y9 91 aaKnown RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 CHD6Q8TD26 2715 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 FCGR2AP12318 317 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 PI3P19957 117 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 ALOX5APP20292 161 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 FAM3BP58499 235 aaPredicted RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 PSG3Q16557 428 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 ACTL10Q5JWF8 245 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 OR2C3Q8N628 320 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 OR4C5Q8NGB2 326 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 FNDC9Q8TBE3 224 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 MOB3AQ96BX8 217 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 RASD2Q96D21 266 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 RBMXL1Q96E39 390 aaKnown RBP6.53□□□□□ -1.36
USP4-211ENST00000485450 SDF2L1Q9HCN8 221 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 TAS2R4Q9NYW5 299 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 KLRF1Q9NZS2 232 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 FUT9Q9Y231 359 aa6.53□□□□□ -1.36
USP4-211ENST00000485450 MSTNO14793 375 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 IL24Q13007 206 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 TMEM183BQ1AE95 376 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 OR4A47Q6IF82 309 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 TMEM144Q7Z5S9 345 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 CHST4Q8NCG5 386 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 DOK4Q8TEW6 326 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 ASB5Q8WWX0 329 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 SDSLQ96GA7 329 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 KCNK17Q96T54 332 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 SRXN1Q9BYN0 137 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 ERRFI1Q9UJM3 462 aaPredicted RBP6.52□□□□□ -1.37
USP4-211ENST00000485450 DHDHQ9UQ10 334 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 HIF3AQ9Y2N7 669 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 RNF114Q9Y508 228 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 A0A0J9YW62 118 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 A0A1B0GWA3 101 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 PGPEP1LA6NFU8 196 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 CLDN1O95832 211 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 DAZAP2Q15038 168 aaPredicted RBP6.52□□□□□ -1.37
USP4-211ENST00000485450 KRTAP27-1Q3LI81 207 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 ZIC4Q8N9L1 334 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 WDR76Q9H967 626 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 ALKBH4Q9NXW9 302 aa6.52□□□□□ -1.37
USP4-211ENST00000485450 RCL1Q9Y2P8 373 aaKnown RBP6.52□□□□□ -1.37
USP4-211ENST00000485450 MRPS28Q9Y2Q9 187 aaKnown RBP6.52□□□□□ -1.37
USP4-211ENST00000485450 TANC2Q9HCD6 1990 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 A0A0G2JNJ9 132 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 A0A1B0GUS0 222 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 G3V4G9 280 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 ZNF43P17038 809 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 GNLYP22749 145 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 GDF1P27539 372 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 CDKN2AP42771 156 aaKnown RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 KIR2DL2P43627 348 aaPredicted RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 C1orf162Q8NEQ5 155 aaPredicted RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 OR2AJ1Q8NGZ0 328 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 MS4A10Q96PG2 267 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 ELL3Q9HB65 397 aaPredicted RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 MRPL27Q9P0M9 148 aaKnown RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 Q9UFV3 132 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 AK3Q9UIJ7 227 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 TBL2Q9Y4P3 447 aaKnown RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 LOC102723971A0A1B0GUV8 181 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 FAM230AA0A1W2PPH8 454 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 CD55P08174 381 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 GNB3P16520 340 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 UQCRFS1P47985 274 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 RPL23AP62750 156 aaKnown RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 ENDOGQ14249 297 aaKnown RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 SLC17A1Q14916 467 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 ERASQ7Z444 233 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 TMEM123Q8N131 208 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 OR10W1Q8NGF6 305 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 OR4D6Q8NGJ1 314 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 TMEM54Q969K7 222 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 CIB3Q96Q77 187 aaPredicted RBP6.51□□□□□ -1.37
USP4-211ENST00000485450 TMEM204Q9BSN7 226 aa6.51□□□□□ -1.37
USP4-211ENST00000485450 GPR84Q9NQS5 396 aa6.51□□□□□ -1.37
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms