RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 BPNT1O95861 308 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 UCHL1P09936 223 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 DCTN2Q13561 401 aaKnown RBP16.78■□□□□ 0.28
USP40-215ENST00000484528 KIAA0141Q14154 515 aaPredicted RBP16.78■□□□□ 0.28
USP40-215ENST00000484528 ECSCRQ19T08 205 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 OR6M1Q8NGM8 313 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 UFD1Q92890 307 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 ABHD14BQ96IU4 210 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 GFI1Q99684 422 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 LPAR5Q9H1C0 372 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 PLEKHJ1Q9NW61 149 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 SCN3BQ9NY72 215 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 NKX1-2Q9UD57 310 aaPredicted RBP16.78■□□□□ 0.28
USP40-215ENST00000484528 FBXO7Q9Y3I1 522 aa16.78■□□□□ 0.28
USP40-215ENST00000484528 RPS25P62851 125 aaKnown RBP16.77■□□□□ 0.28
USP40-215ENST00000484528 GNB1P62873 340 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 IRF3Q14653 427 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 ZNF260Q3ZCT1 412 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 ASPHD1Q5U4P2 390 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 LIN54Q6MZP7 749 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 ZNF880Q6PDB4 577 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 ZNF491Q8N8L2 437 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 NPBQ8NG41 125 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 CASTOR1Q8WTX7 329 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 UBE2E2Q96LR5 201 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 FBXL15Q9H469 300 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 PLGRKTQ9HBL7 147 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 OR1A1Q9P1Q5 309 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 SLC23A1Q9UHI7 598 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 AK3Q9UIJ7 227 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 SCOCQ9UIL1 159 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 A3GALT2U3KPV4 340 aa16.77■□□□□ 0.28
USP40-215ENST00000484528 NDUFA3O95167 84 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 IGLV1-40P01703 118 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 HSMCR30P0CW71 290 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 CT45A6P0DMU7 189 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 CT45A5P0DMU8 189 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 CT45A7P0DMV0 189 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 AQP4P55087 323 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 MOB1BQ7L9L4 216 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 OR1N2Q8NGR9 330 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 CHCHD6Q9BRQ6 235 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP16.76■□□□□ 0.27
USP40-215ENST00000484528 PIPOXQ9P0Z9 390 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 VSIG4Q9Y279 399 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 AK6Q9Y3D8 172 aaKnown RBP16.76■□□□□ 0.27
USP40-215ENST00000484528 STAB2Q8WWQ8 2551 aa16.76■□□□□ 0.27
USP40-215ENST00000484528 H7C2Y5 167 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 I3L521 148 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 RAB29O14966 203 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 PLGLAQ15195 96 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 FAM71F2Q6NXP2 309 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 TMEM91Q6ZNR0 172 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 ABHD5Q8WTS1 349 aa16.75■□□□□ 0.27
USP40-215ENST00000484528 ALX4Q9H161 411 aaPredicted RBP16.75■□□□□ 0.27
USP40-215ENST00000484528 LSM4Q9Y4Z0 139 aaKnown RBP16.75■□□□□ 0.27
USP40-215ENST00000484528 A0A1W2PN81 502 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 H0YJW9 148 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 SOX15O60248 233 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 OR8U8P0C7N1 319 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 CD37P11049 281 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 ARSBP15848 533 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 CHRNA7P36544 502 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 RAB9AP51151 201 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 CLDN12P56749 244 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 HLA-DRB3P79483 266 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 ZNF616Q08AN1 781 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 NRG4Q8WWG1 115 aa16.74■□□□□ 0.27
USP40-215ENST00000484528 URM1Q9BTM9 101 aaKnown RBP16.74■□□□□ 0.27
USP40-215ENST00000484528 OR5H14A6NHG9 310 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 FCN1O00602 326 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 SLC17A2O00624 439 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 RRHO14718 337 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 HSPA12AO43301 675 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 GSTP1P09211 210 aaKnown RBP16.73■□□□□ 0.27
USP40-215ENST00000484528 SNRPBP14678 240 aaKnown RBP16.73■□□□□ 0.27
USP40-215ENST00000484528 CEACAM6P40199 344 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 VEGFCP49767 419 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 CX3CL1P78423 397 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 DRAXINQ8NBI3 349 aaPredicted RBP16.73■□□□□ 0.27
USP40-215ENST00000484528 MINDY2Q8NBR6 621 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 WWC2-AS2Q96NR7 200 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 CLCC1Q96S66 551 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 C11orf54Q9H0W9 315 aaPredicted RBP16.73■□□□□ 0.27
USP40-215ENST00000484528 RNF150Q9ULK6 438 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 GAB2Q9UQC2 676 aa16.73■□□□□ 0.27
USP40-215ENST00000484528 KMT2CQ8NEZ4 4911 aaKnown RBP16.73■□□□□ 0.27
USP40-215ENST00000484528 TRBV6-6A0A0A6YYG2 114 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 LY86O95711 162 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 SCTP09683 121 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 TMEM50BP56557 158 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 RUNX1Q01196 453 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 RAB11BQ15907 218 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 C19orf54Q5BKX5 351 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 DCUN1D4Q92564 292 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 ARHGAP5-AS1Q96IT6 56 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 AGMATQ9BSE5 352 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 FAM103A1Q9BTL3 118 aaKnown RBP16.72■□□□□ 0.27
USP40-215ENST00000484528 CCDC90BQ9GZT6 254 aa16.72■□□□□ 0.27
USP40-215ENST00000484528 RIMS4Q9H426 269 aaPredicted RBP16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms