RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PPIL1Q9Y3C6 166 aa7.83□□□□□ -1.16
COL6A3-210ENST00000473258 HDGFL3Q9Y3E1 203 aa7.83□□□□□ -1.16
COL6A3-210ENST00000473258 A0A0J9YY10 115 aa7.83□□□□□ -1.16
COL6A3-210ENST00000473258 KIR2DS2P43631 304 aa7.83□□□□□ -1.16
COL6A3-210ENST00000473258 C19orf54Q5BKX5 351 aa7.83□□□□□ -1.16
COL6A3-210ENST00000473258 A0A0J9YW62 118 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 A0A1B0GTH9 108 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MS4A18H0YCH9 400 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 GABRG2P18507 467 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MS4A18Q3C1V0 323 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 PAPPA-AS1Q5QFB9 102 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 LY6G5CQ5SRR4 150 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 C2orf82Q6UX34 121 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 TPRX1Q8N7U7 411 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 KREMEN2Q8NCW0 462 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MRGPRFQ96AM1 343 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 NPVFQ9HCQ7 196 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 DNAJB12Q9NXW2 375 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 ERG28Q9UKR5 140 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MYH1P12882 1939 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 RNF17Q9BXT8 1623 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 ASCC3Q8N3C0 2202 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 LGALS4P56470 323 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 RPL23P62829 140 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 YBX1P67809 324 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 BAHD1Q8TBE0 780 aaPredicted RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 SLC25A43Q8WUT9 341 aaPredicted RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 KLK15Q9H2R5 256 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 KLK13Q9UKR3 277 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 RNF222A6NCQ9 220 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 LGALS1P09382 135 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 SSTR5P35346 364 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 FKBP1AP62942 108 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 SFTPA2Q8IWL1 248 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 SFTPA1Q8IWL2 248 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 ANKRD29Q8N6D5 301 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 RNASEH2CQ8TDP1 164 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 DUX5Q96PT3 197 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 POLR3KQ9Y2Y1 108 aaPredicted RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MAP3K4Q9Y6R4 1608 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 IGLON5A6NGN9 336 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 PRKNO60260 465 aaPredicted RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 OR2H2O95918 312 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 CRYBB3P26998 211 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 C10orf111Q8N326 155 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 KLHDC7BQ96G42 594 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 RPRMQ9NS64 109 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 FGF21Q9NSA1 209 aa7.82□□□□□ -1.16
COL6A3-210ENST00000473258 MRPS18AQ9NVS2 196 aaKnown RBP7.82□□□□□ -1.16
COL6A3-210ENST00000473258 A0A1W2PR48 441 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 H3BRM9 83 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 EPPINO95925 133 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 SRFP11831 508 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 MPZP25189 248 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 APOBEC1P41238 236 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CST6Q15828 149 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 IL36RNQ9UBH0 155 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 IGHV2OR16-5A0A0B4J2B6 119 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 K7EP34 96 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 C1QCP02747 245 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 NPPBP16860 134 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 FKBP2P26885 142 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CACNG7P62955 275 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 DACT2Q5SW24 774 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 DEFB123Q8N688 67 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 OR1L8Q8NGR8 309 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 SHISA4Q96DD7 197 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 C1QTNF4Q9BXJ3 329 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CCL28Q9NRJ3 127 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 COL5A2P05997 1499 aaPredicted RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CABIN1Q9Y6J0 2220 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 DNAJC13O75165 2243 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 ZFAND5O76080 213 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CELA3AP09093 270 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 EFNB2P52799 333 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 RPS20P60866 119 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 RBM3P98179 157 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CENPWQ5EE01 88 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 KIRREL2Q6UWL6 708 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 IRF7Q92985 503 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 HEXA-AS1Q9H8Q6 139 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 SHROOM2Q13796 1616 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 MYO3AQ8NEV4 1616 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 EGR1P18146 543 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 PDCD1Q15116 288 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 MBNL2Q5VZF2 373 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CLDND2Q8NHS1 167 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 SRSF12Q8WXF0 261 aaKnown RBP7.81□□□□□ -1.16
COL6A3-210ENST00000473258 GGTLC1Q9BX51 225 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 DYNLRB1Q9NP97 96 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 PILRBQ9UKJ0 227 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 CHD5Q8TDI0 1954 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 KIF1AQ12756 1690 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 C9orf118A6NHY6 69 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 PPP1R17O96001 155 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 ANXA2RQ3ZCQ2 193 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 AQP3Q92482 292 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 WNT6Q9Y6F9 365 aa7.81□□□□□ -1.16
COL6A3-210ENST00000473258 SLIT2O94813 1529 aa7.8□□□□□ -1.16
COL6A3-210ENST00000473258 FRMPD1Q5SYB0 1578 aa7.8□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 36 ms