RNA–Protein interactions for RNA: ENST00000468384.1

HMGB1-207, Transcript of high mobility group box 1, humanhuman

TSL 1 (best)

Gene HMGB1, Length 503 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-207ENST00000468384 OR13F1Q8NGS4 319 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 GLYATL2Q8WU03 294 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 SDSLQ96GA7 329 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 ANKRD60Q9BZ19 345 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 GOLPH3Q9H4A6 298 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 RHOJQ9H4E5 214 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 ALG9Q9H6U8 611 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 NRN1Q9NPD7 142 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 MIEF1Q9NQG6 463 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 PLSCR3Q9NRY6 295 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 PIPOXQ9P0Z9 390 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF222Q9UK12 451 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 EMCNQ9ULC0 261 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 UGT2A1Q9Y4X1 527 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 TIMM22Q9Y584 194 aa3.23□□□□□ -1.89
HMGB1-207ENST00000468384 SMIM1B2RUZ4 78 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 H0YJW9 148 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 CFLARO15519 480 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 PSTPIP1O43586 416 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 ANP32DO95626 131 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 TPPP2P59282 170 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 TPM4P67936 248 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 PUDPQ08623 228 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 C2orf80Q0P641 193 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 SLAQ13239 276 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 EBI3Q14213 229 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 OR4D1Q15615 310 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 HIST3H3Q16695 136 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 RPEL1Q2QD12 228 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 RFX4Q33E94 735 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 MOGAT2Q3SYC2 334 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 DDI2Q5TDH0 399 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 FAM27BQ5VT28 67 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF57Q68EA5 555 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 ANKRD26P1Q6NSI1 321 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 MORN3Q6PF18 240 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 UQCC3Q6UW78 93 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 NET1Q7Z628 596 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 VTCN1Q7Z7D3 282 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 HOGA1Q86XE5 327 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 Q8N6K4 173 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 TCTEX1D1Q8N7M0 179 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 OR9Q2Q8NGE9 314 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 APOBEC3DQ96AK3 386 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 SGK3Q96BR1 496 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 SLC25A44Q96H78 314 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 TSGA10Q9BZW7 698 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 C6orf62Q9GZU0 229 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 PARP11Q9NR21 331 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 POLE4Q9NR33 117 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 NUDT15Q9NV35 164 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 LINC00846Q9NV44 126 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 MBD2Q9UBB5 411 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 KLK11Q9UBX7 282 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 ZNF107Q9UII5 783 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 VAX2Q9UIW0 290 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 PYCARDQ9ULZ3 195 aa3.22□□□□□ -1.89
HMGB1-207ENST00000468384 BZW2Q9Y6E2 419 aaKnown RBP3.22□□□□□ -1.89
HMGB1-207ENST00000468384 TRAV6A0A075B6T7 132 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 TRAV3A0A0B4J244 114 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 A0A1W2PPV4 95 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 FBLL1A6NHQ2 334 aaKnown RBP3.21□□□□□ -1.9
HMGB1-207ENST00000468384 C2orf70A6NJV1 201 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF705EA8MWA4 302 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-207ENST00000468384 BUB3O43684 328 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 OR2T1O43869 369 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 STX11O75558 287 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 CST1P01037 141 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 IGKV2-30P06310 120 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 TPM3P06753 285 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 GSTA1P08263 222 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 CST2P09228 141 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 H2AFZP0C0S5 128 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 PSG2P11465 335 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 UQCRBP14927 111 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 HOXB6P17509 224 aaKnown RBP3.21□□□□□ -1.9
HMGB1-207ENST00000468384 MARCKSL1P49006 195 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 PAX9P55771 341 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 RGS8P57771 180 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-207ENST00000468384 HLA-DRB5Q30154 266 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 SPSB3Q6PJ21 355 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 H2AFVQ71UI9 128 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 FAM122BQ7Z309 247 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 HMGN2P46Q86SG4 172 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 SMIM29Q86T20 159 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 C4orf33Q8N1A6 199 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 OR1M1Q8NGA1 313 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 OR6F1Q8NGZ6 308 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 GPX8Q8TED1 209 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 SCARB1Q8WTV0 552 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 RBPMSQ93062 196 aaKnown RBP3.21□□□□□ -1.9
HMGB1-207ENST00000468384 TOMM40LQ969M1 308 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 RPEQ96AT9 228 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 ZNF714Q96N38 554 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 MTCH1Q9NZJ7 389 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 GHRLQ9UBU3 117 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 GAB2Q9UQC2 676 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 RNF24Q9Y225 148 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 GSTK1Q9Y2Q3 226 aa3.21□□□□□ -1.9
HMGB1-207ENST00000468384 WDR45Q9Y484 360 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms