RNA–Protein interactions for RNA: ENST00000466274.1

NCL-208, Transcript of nucleolin, human

TSL 2

Gene NCL, Length 671 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NCL-208	ENST00000466274	DEFB131B	A0A096LNP1	70 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	TRAV25	A0A0B4J276	109 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	C2orf70	A6NJV1	201 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	RIIAD1	A6NNX1	92 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	SLC33A1	O00400	549 aa	Predicted RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	SDCBP	O00560	298 aa	Predicted RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	LANCL1	O43813	399 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	NDUFA3	O95167	84 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	IGLV3-1	P01715	115 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	CALCB	P10092	127 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	ZNF3	P17036	446 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	RPL35A	P18077	110 aa	Known RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	HLA-DMB	P28068	263 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	SSTR5	P35346	364 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	LGALS7	P47929	136 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	KCNJ3	P48549	501 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	RBP2	P50120	134 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	ZNF137P	P52743	207 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	ACTR3	P61158	418 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	SF3A3	Q12874	501 aa	Known RBP eCLIP	4.23	□□□□□ -1.73	3e-25	■■■■□ 20
NCL-208	ENST00000466274	CRMP1	Q14194	572 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	RNF212	Q495C1	297 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	METTL21C	Q5VZV1	264 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	ZNF562	Q6V9R5	426 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	C5orf24	Q7Z6I8	188 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	TMEM61	Q8N0U2	210 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	OR2T12	Q8NG77	320 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	OR51T1	Q8NGJ9	327 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	TMEM163	Q8TC26	289 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	GNPDA2	Q8TDQ7	276 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	AMELY	Q99218	206 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	ELAC2	Q9BQ52	826 aa	Known RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	FUZ	Q9BT04	418 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	CCDC28B	Q9BUN5	200 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	NMNAT2	Q9BZQ4	307 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	COMMD4	Q9H0A8	199 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	PPIL3	Q9H2H8	161 aa	Known RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	MOB1A	Q9H8S9	216 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	NUFIP1	Q9UHK0	495 aa	Known RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274	KIF25	Q9UIL4	384 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	LAMP5	Q9UJQ1	280 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	BAIAP2	Q9UQB8	552 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	RPL36	Q9Y3U8	105 aa	Known RBP	4.23	□□□□□ -1.73
NCL-208	ENST00000466274		V9GYS6	101 aa		4.23	□□□□□ -1.73
NCL-208	ENST00000466274	TRBV4-1	A0A0J9YWV2	114 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	FAM220BP	B1ANY3	271 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	SLC22A1	O15245	554 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	TGOLN2	O43493	480 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	ZNF254	O75437	659 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	NPPA	P01160	153 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	CD74	P04233	296 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	OCM2	P0CE71	109 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	OCM	P0CE72	109 aa	Predicted RBP	4.22	□□□□□ -1.73
NCL-208	ENST00000466274	CBLN1	P23435	193 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	MTCP1	P56278	107 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	FAM3B	P58499	235 aa	Predicted RBP	4.22	□□□□□ -1.73
NCL-208	ENST00000466274	TSPAN31	Q12999	210 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	TMEM30B	Q3MIR4	351 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	PAN3	Q58A45	887 aa	Known RBP	4.22	□□□□□ -1.73
NCL-208	ENST00000466274	ASCL4	Q6XD76	172 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	C6orf223	Q8N319	242 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	TCEANC	Q8N8B7	351 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	CCDC54	Q8NEL0	328 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	OR5T1	Q8NG75	326 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	ARL11	Q969Q4	196 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	OTULIN	Q96BN8	352 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	ZNF479	Q96JC4	524 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	FAM103A1	Q9BTL3	118 aa	Known RBP	4.22	□□□□□ -1.73
NCL-208	ENST00000466274	SPAG4	Q9NPE6	437 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	IL1RAP	Q9NPH3	570 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	ARL8B	Q9NVJ2	186 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	STEAP1	Q9UHE8	339 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	GTF2A1L	Q9UNN4	478 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	AP3M1	Q9Y2T2	418 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	CDH10	Q9Y6N8	788 aa		4.22	□□□□□ -1.73
NCL-208	ENST00000466274	IGKV1-27	A0A075B6S5	117 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	TMEM272	A0A1B0GTI8	110 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274		A6NIN4	97 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274		H0YJX3	145 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	HSPB6	O14558	160 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	DEFB4A	O15263	64 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	RGS16	O15492	202 aa	Predicted RBP	4.21	□□□□□ -1.74
NCL-208	ENST00000466274	KDM4B	O94953	1096 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	GADD45G	O95257	159 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	TRBV12-3	P01733	135 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	CLU	P10909	449 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	PRKACB	P22694	351 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	NPY1R	P25929	384 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	EPHA2	P29317	976 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	FCGR2B	P31994	310 aa	Predicted RBP	4.21	□□□□□ -1.74
NCL-208	ENST00000466274	VHL	P40337	213 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	GSS	P48637	474 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	RIDA	P52758	137 aa	Known RBP	4.21	□□□□□ -1.74
NCL-208	ENST00000466274	CMC4	P56277	68 aa	Predicted RBP	4.21	□□□□□ -1.74
NCL-208	ENST00000466274	PAX5	Q02548	391 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	PDZK1IP1	Q13113	114 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	UBE2V2	Q15819	145 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	MICA	Q29983	383 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	C6orf141	Q5SZD1	244 aa		4.21	□□□□□ -1.74
NCL-208	ENST00000466274	BCL2L15	Q5TBC7	163 aa		4.21	□□□□□ -1.74

Retrieved 100 of 20,778 RNA–protein pairs in 82 ms