RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 ZNF439Q8NDP4 499 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 OR2T10Q8NGZ9 312 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 CT45A3Q8NHU0 189 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 ST6GALNAC5Q9BVH7 336 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 GHITMQ9H3K2 345 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 ZNF702PQ9H963 129 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 NDUFA13Q9P0J0 144 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 RSL24D1Q9UHA3 163 aaKnown RBP13.11□□□□□ -0.31
SF3A1-204ENST00000447376 SLC23A1Q9UHI7 598 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 ZNF230Q9UIE0 474 aaPredicted RBP13.11□□□□□ -0.31
SF3A1-204ENST00000447376 SIGLEC9Q9Y336 463 aa13.11□□□□□ -0.31
SF3A1-204ENST00000447376 FAM90A9PA6NNJ1 464 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 SLC31A2O15432 143 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 RGS5O15539 181 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 HPGDSO60760 199 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 SCTP09683 121 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 CTXN2P0C2S0 81 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 CD1BP29016 333 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 CEACAM6P40199 344 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 ZNF137PP52743 207 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 DIAPH2-AS1Q14236 149 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 GNMTQ14749 295 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 HERPUD1Q15011 391 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 C9orf152Q5JTZ5 239 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 Q6ZPA2 131 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 Q8N2B8 174 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 OR10J5Q8NHC4 309 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 DYNC2LI1Q8TCX1 351 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 NUDCD2Q8WVJ2 157 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 CFHR4Q92496 578 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 S1PR3Q99500 378 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 PIPOXQ9P0Z9 390 aa13.1□□□□□ -0.31
SF3A1-204ENST00000447376 ITGB1BP1O14713 200 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 LANCL1O43813 399 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 EIF4EP06730 217 aaKnown RBP13.09□□□□□ -0.31
SF3A1-204ENST00000447376 ELK1P19419 428 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 ZNF134P52741 427 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 TAS2R20P59543 309 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 BLCAPP62952 87 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 HNF4GQ14541 408 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 ABCA11PQ4W5N1 156 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 C15orf40Q8WUR7 153 aa13.09□□□□□ -0.31
SF3A1-204ENST00000447376 ELF5Q9UKW6 265 aaPredicted RBP13.09□□□□□ -0.31
SF3A1-204ENST00000447376 MRPS7Q9Y2R9 242 aaKnown RBP13.09□□□□□ -0.31
SF3A1-204ENST00000447376 NCBP2LA6PVI3 153 aaKnown RBP13.08□□□□□ -0.32
SF3A1-204ENST00000447376 RAB29O14966 203 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 BET1O15155 118 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 FGF16O43320 207 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 MOSP00540 346 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 GSTT2P0CG29 244 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 GSTT2BP0CG30 244 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 PRSS3P35030 304 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 HABP2Q14520 560 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-204ENST00000447376 C2orf68Q2NKX9 166 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 FAM53AQ6NSI3 398 aaPredicted RBP13.08□□□□□ -0.32
SF3A1-204ENST00000447376 C5orf24Q7Z6I8 188 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 MAFIPQ8WZ33 124 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 ST6GALNAC6Q969X2 333 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 GINS4Q9BRT9 223 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 IFT46Q9NQC8 304 aa13.08□□□□□ -0.32
SF3A1-204ENST00000447376 IGHV3-72A0A0B4J1Y9 119 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 SSX5O60225 188 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 TPPPO94811 219 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 SRSF4Q08170 494 aaKnown RBP13.07□□□□□ -0.32
SF3A1-204ENST00000447376 PRR31Q5SQ13 230 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 FAM71F2Q6NXP2 309 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 CNIH2Q6PI25 160 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 OR8H1Q8NGG4 311 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 CABLES2Q9BTV7 478 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 RBM38Q9H0Z9 239 aaKnown RBP13.07□□□□□ -0.32
SF3A1-204ENST00000447376 OR1A1Q9P1Q5 309 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 ANXA10Q9UJ72 324 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 ZNF221Q9UK13 617 aa13.07□□□□□ -0.32
SF3A1-204ENST00000447376 TRBV6-7A0A0A0MS04 114 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 ST8SIA5O15466 376 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 FBXO24O75426 580 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 ARPC4P59998 168 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 EBI3Q14213 229 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 IGSF11Q5DX21 431 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 CENPVQ7Z7K6 275 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-204ENST00000447376 BEST4Q8NFU0 473 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 MCFD2Q8NI22 146 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 EAF1Q96JC9 268 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-204ENST00000447376 RASL11BQ9BPW5 248 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 C6orf62Q9GZU0 229 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-204ENST00000447376 SCPEP1Q9HB40 452 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 SERTAD4Q9NUC0 356 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 RDH8Q9NYR8 311 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 RABL2AQ9UBK7 228 aaPredicted RBP13.06□□□□□ -0.32
SF3A1-204ENST00000447376 EXTL2Q9UBQ6 330 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 RABL2BQ9UNT1 228 aa13.06□□□□□ -0.32
SF3A1-204ENST00000447376 RBM7Q9Y580 266 aaKnown RBP13.06□□□□□ -0.32
SF3A1-204ENST00000447376 SAA2-SAA4A0A096LPE2 208 aa13.05□□□□□ -0.32
SF3A1-204ENST00000447376 IGKV1-6A0A0C4DH72 117 aa13.05□□□□□ -0.32
SF3A1-204ENST00000447376 SAA2P0DJI9 122 aaPredicted RBP13.05□□□□□ -0.32
SF3A1-204ENST00000447376 LSAMPQ13449 338 aa13.05□□□□□ -0.32
SF3A1-204ENST00000447376 HOGA1Q86XE5 327 aa13.05□□□□□ -0.32
SF3A1-204ENST00000447376 DGCR14Q96DF8 476 aaKnown RBP13.05□□□□□ -0.32
SF3A1-204ENST00000447376 SLIRPQ9GZT3 109 aaKnown RBP13.05□□□□□ -0.32
SF3A1-204ENST00000447376 TOLLIPQ9H0E2 274 aa13.05□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 29.1 ms