RNA–Protein interactions for RNA: ENST00000433892.6

CD44-209, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,292 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-209ENST00000433892 ELLP55199 621 aaPredicted RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 OR8G2PQ6IF36 304 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 ZNF826PQ6ZT77 177 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 USF3Q68DE3 2245 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 PRR14LQ5THK1 2151 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 UBE2L5PA0A1B0GUS4 154 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 LINC00587B1AMM8 73 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 PPIHO43447 177 aaKnown RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 CLDN1O95832 211 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 KRASP01116 189 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 TFF1P04155 84 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 MPV17P39210 176 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 OR3A1P47881 315 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 HES3Q5TGS1 186 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 ZNF808Q8N4W9 903 aaPredicted RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 PSMG3Q9BT73 122 aaPredicted RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 WDR61Q9GZS3 305 aaKnown RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 OR2D2Q9H210 308 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 OBP2BQ9NPH6 170 aa9.94□□□□□ -0.82
CD44-209ENST00000433892 CISD1Q9NZ45 108 aaKnown RBP9.94□□□□□ -0.82
CD44-209ENST00000433892 CHD3Q12873 2000 aaKnown RBP9.93□□□□□ -0.82
CD44-209ENST00000433892 C12orf77C9JDV5 145 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 CYB5BO43169 146 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 SP9P0CG40 484 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 RAC2P15153 192 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 G6PCP35575 357 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 RPL30P62888 115 aaKnown RBP9.93□□□□□ -0.82
CD44-209ENST00000433892 TGFBR3Q03167 851 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 AESQ08117 197 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 SLC38A11Q08AI6 406 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 ZNF816Q0VGE8 651 aaPredicted RBP9.93□□□□□ -0.82
CD44-209ENST00000433892 OR52L2PQ8NGH6 319 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 OR10G4Q8NGN3 311 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 MBD3L1Q8WWY6 194 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 GMPPAQ96IJ6 420 aaPredicted RBP9.93□□□□□ -0.82
CD44-209ENST00000433892 RBKSQ9H477 322 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 SIRT7Q9NRC8 400 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 KCNIP1Q9NZI2 227 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 CXorf65A6NEN9 183 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 IQCF6A8MYZ5 107 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 J3QW42 95 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 CD55P08174 381 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 NDUFA6P56556 154 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 SERF2P84101 59 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 TNFRSF9Q07011 255 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 BEND4Q6ZU67 534 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 ZNF645Q8N7E2 425 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 KLF14Q8TD94 323 aaPredicted RBP9.93□□□□□ -0.82
CD44-209ENST00000433892 CA5BP1Q8WTZ4 195 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 TAF15Q92804 592 aaKnown RBP eCLIP9.93□□□□□ -0.82
CD44-209ENST00000433892 GALMQ96C23 342 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 C5orf30Q96GV9 206 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 ZDHHC11Q9H8X9 412 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 MIOXQ9UGB7 285 aa9.93□□□□□ -0.82
CD44-209ENST00000433892 TMEM30CPA0ZSE6 113 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 RNF212BA8MTL3 300 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 CEBPZOSA8MTT3 80 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 WISP2O76076 250 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 AGFG2O95081 481 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 IL2RGP31785 369 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 TMEM41BQ5BJD5 291 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 ZNF610Q8N9Z0 462 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 TMPRSS5Q9H3S3 457 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 DOK5Q9P104 306 aa9.92□□□□□ -0.82
CD44-209ENST00000433892 MAP1LC3B2A6NCE7 125 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 HMGB3O15347 200 aaKnown RBP9.91□□□□□ -0.82
CD44-209ENST00000433892 MLNRO43193 412 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 TRGC2P03986 189 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 HOXA5P20719 270 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 TLE1Q04724 770 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 BTNL3Q6UXE8 466 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 Q6ZR03 302 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 MAP1LC3BQ9GZQ8 125 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 CLN8Q9UBY8 286 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 FZR1Q9UM11 496 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 DOCK11Q5JSL3 2073 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 IFITM10A6NMD0 228 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 B4DEV8 164 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 FAM90A26D6RGX4 464 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 S1PR2O95136 353 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 IGKV1D-33P01593 117 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 IGKV1-33P01594 117 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 HBZP02008 142 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 GABRA2P47869 451 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 LINC00205P59089 165 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 RPS16P62249 146 aaKnown RBP9.91□□□□□ -0.82
CD44-209ENST00000433892 GABRA6Q16445 453 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 PLA2G2CQ5R387 149 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 FIP1L1Q6UN15 594 aaKnown RBP9.91□□□□□ -0.82
CD44-209ENST00000433892 TMEM14EPQ6UXP3 125 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 RPP25LQ8N5L8 163 aaKnown RBP9.91□□□□□ -0.82
CD44-209ENST00000433892 TPRX1Q8N7U7 411 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 CNEP1R1Q8N9A8 125 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 TMEM178AQ8NBL3 297 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 MRGPRDQ8TDS7 321 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 TRIB1Q96RU8 372 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 TOLLIPQ9H0E2 274 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 HES4Q9HCC6 221 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 UFSP2Q9NUQ7 469 aa9.91□□□□□ -0.82
CD44-209ENST00000433892 HSPB7Q9UBY9 170 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms