RNA–Protein interactions for RNA: ENST00000431357.1

USP4-205, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 5

Gene USP4, Length 2,141 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-205ENST00000431357 ERVFRD-1P60508 538 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 ZNF146Q15072 292 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 TMEM164Q5U3C3 297 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 ZNF343Q6P1L6 599 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 MDP1Q86V88 176 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 C1orf210Q8IVY1 113 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 CA5BP1Q8WTZ4 195 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 WDR61Q9GZS3 305 aaKnown RBP9.56□□□□□ -0.88
USP4-205ENST00000431357 CTDSP1Q9GZU7 261 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 DOK5Q9P104 306 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 VAX2Q9UIW0 290 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 KCNS2Q9ULS6 477 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 GOLT1BQ9Y3E0 138 aa9.56□□□□□ -0.88
USP4-205ENST00000431357 SEC14L6B5MCN3 397 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 SIRPB1O00241 398 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 CIDEAO60543 219 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 RD3LP0DJH9 198 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 MEOX1P50221 254 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ARL16Q0P5N6 197 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 SLC10A1Q14973 349 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ATP6V1FQ16864 119 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 LCN15Q6UWW0 184 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 C1orf87Q8N0U7 546 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 SCCPDHQ8NBX0 429 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 SLC24A4Q8NFF2 622 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 SDF2L1Q9HCN8 221 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 PLA2G3Q9NZ20 509 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 OR14J1Q9UGF5 321 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 TGIF2-C20orf24A0A0A6YYL0 155 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ZFP92A6NM28 416 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 M0QZK8 103 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ITGB1BP1O14713 200 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 CYB5BO43169 146 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 MT-CO3P00414 261 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 PGA5P0DJD9 388 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ZNF16P17020 682 aaPredicted RBP9.55□□□□□ -0.88
USP4-205ENST00000431357 MSMO1Q15800 293 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 ZNF726P1Q15940 193 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 GABRA6Q16445 453 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 IZUMO4Q1ZYL8 232 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 LINC00696Q6ZRV3 163 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 HAPLN4Q86UW8 402 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 DRAM1Q8N682 238 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 TMEM105Q8N8V8 129 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 OR5R1Q8NH85 324 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 RCC1LQ96I51 464 aaKnown RBP9.55□□□□□ -0.88
USP4-205ENST00000431357 ZNF665Q9H7R5 613 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 KCNIP1Q9NZI2 227 aa9.55□□□□□ -0.88
USP4-205ENST00000431357 CNTRLQ7Z7A1 2325 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 A0A1W2PR80 420 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 WDR1O75083 606 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 YIF1AO95070 293 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 SELEP16581 610 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 USF2Q15853 346 aaPredicted RBP9.54□□□□□ -0.88
USP4-205ENST00000431357 TMEM14EPQ6UXP3 125 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 CENPVQ7Z7K6 275 aaPredicted RBP9.54□□□□□ -0.88
USP4-205ENST00000431357 FGFRL1Q8N441 504 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 TAF15Q92804 592 aaKnown RBP eCLIP9.54□□□□□ -0.88
USP4-205ENST00000431357 FAM210BQ96KR6 192 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 OR4C12Q96R67 309 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 CDX2Q99626 313 aaPredicted RBP9.54□□□□□ -0.88
USP4-205ENST00000431357 NDUFAF3Q9BU61 184 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 OR51B6Q9H340 312 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 C12orf49Q9H741 205 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 VSIRQ9H7M9 311 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 FOXJ2Q9P0K8 574 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 URGCP-MRPS24S4R325 110 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 DOCK10Q96BY6 2186 aa9.54□□□□□ -0.88
USP4-205ENST00000431357 MAP1LC3B2A6NCE7 125 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BKO60814 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 NXPH2O95156 264 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 OPN1MWP04001 364 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BJP06899 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 OPN1MW2P0DN77 364 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 OPN1MW3P0DN78 364 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BOP23527 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BBP33778 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BDP58876 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 PPP1CBP62140 327 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BCP62807 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 NKX6-1P78426 367 aaPredicted RBP9.53□□□□□ -0.88
USP4-205ENST00000431357 SLC38A11Q08AI6 406 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST2H2BEQ16778 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 SPANXN5Q5MJ07 72 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.53□□□□□ -0.88
USP4-205ENST00000431357 WDR86Q86TI4 376 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 MRPL52Q86TS9 123 aaKnown RBP9.53□□□□□ -0.88
USP4-205ENST00000431357 ZNF645Q8N7E2 425 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 TCTEX1D1Q8N7M0 179 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 MDS2Q8NDY4 140 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BHQ93079 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 FER1L6-AS2Q96M78 137 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BNQ99877 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 HIST1H2BMQ99879 126 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 AGMATQ9BSE5 352 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 MAP1LC3BQ9GZQ8 125 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 CDH20Q9HBT6 801 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 MYO15AQ9UKN7 3530 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 TRBV24-1A0A075B6N3 115 aa9.53□□□□□ -0.88
USP4-205ENST00000431357 TMEM30CPA0ZSE6 113 aa9.53□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms