RNA–Protein interactions for RNA: ENST00000430158.5

USP40-205, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 3

Gene USP40, Length 1,047 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-205ENST00000430158 MEIS3P1A6NDR6 274 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 A6NDX4 124 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 H3BUX3 64 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 BET1O15155 118 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 RGS5O15539 181 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 LANCL1O43813 399 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 LPLP06858 475 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 CEACAM3P40198 252 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 OR3A3P47888 321 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 ZNF660Q6AZW8 331 aaPredicted RBP9.97□□□□□ -0.81
USP40-205ENST00000430158 C16orf87Q6PH81 154 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 ZNF833PQ6ZTB9 187 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 CCDC190Q86UF4 302 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 OR10X1Q8NGY0 326 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 OR5R1Q8NH85 324 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 FAM216AQ8WUB2 273 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 RTN4IP1Q8WWV3 396 aaPredicted RBP9.97□□□□□ -0.81
USP40-205ENST00000430158 C5orf30Q96GV9 206 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 DIRAS2Q96HU8 199 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 DPAGT1Q9H3H5 408 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 VPREB3Q9UKI3 123 aa9.97□□□□□ -0.81
USP40-205ENST00000430158 SAA2-SAA4A0A096LPE2 208 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 IGHV1-3A0A0C4DH29 117 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 HSD17B6O14756 317 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 TIMM23O14925 209 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 CTDSPLO15194 276 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 CTXN2P0C2S0 81 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 SAA2P0DJI9 122 aaPredicted RBP9.96□□□□□ -0.82
USP40-205ENST00000430158 EBI3Q14213 229 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 PLA1AQ53H76 456 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 THNSL2Q86YJ6 484 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR8H3Q8N146 312 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 LYG1Q8N1E2 194 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 DRAM1Q8N682 238 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR2AK2Q8NG84 335 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR5AP2Q8NGF4 316 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR6Q1Q8NGQ2 317 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR52I2Q8NH67 350 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 OR10J5Q8NHC4 309 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 TOMM40LQ969M1 308 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 RPEQ96AT9 228 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 MTFP1Q9UDX5 166 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 GAB2Q9UQC2 676 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 TCF19Q9Y242 345 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 RBMX2Q9Y388 322 aaKnown RBP9.96□□□□□ -0.82
USP40-205ENST00000430158 V9GYH0 126 aa9.96□□□□□ -0.82
USP40-205ENST00000430158 IGKV1D-13A0A0B4J2D9 117 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 ZNF736B4DX44 427 aaPredicted RBP9.95□□□□□ -0.82
USP40-205ENST00000430158 TRIM77I1YAP6 450 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 HSPA12AO43301 675 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 CHST1O43916 411 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 GPR137BO60478 399 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 IGLV2-14P01704 120 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 GAPDHP04406 335 aaKnown RBP9.95□□□□□ -0.82
USP40-205ENST00000430158 FCER2P06734 321 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 IGKV1-13P0DP09 117 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 REG1BP48304 166 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RAB7AP51149 207 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 DGCR2P98153 550 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RELBQ01201 579 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RPL39P5Q59GN2 51 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 PYHIN1Q6K0P9 492 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 CCDC144NLQ6NUI1 221 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 DHRS11Q6UWP2 260 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 OVCH2Q7RTZ1 564 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.95□□□□□ -0.82
USP40-205ENST00000430158 EDARADDQ8WWZ3 215 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RBMXL1Q96E39 390 aaKnown RBP9.95□□□□□ -0.82
USP40-205ENST00000430158 ABHD14BQ96IU4 210 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 GHITMQ9H3K2 345 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RABL2AQ9UBK7 228 aaPredicted RBP9.95□□□□□ -0.82
USP40-205ENST00000430158 KLK11Q9UBX7 282 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RNF150Q9ULK6 438 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 RABL2BQ9UNT1 228 aa9.95□□□□□ -0.82
USP40-205ENST00000430158 GABARAPH6UMI1 98 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 RAB29O14966 203 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 GSTZ1O43708 216 aaPredicted RBP9.94□□□□□ -0.82
USP40-205ENST00000430158 OR8U9P0C7N5 309 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 CT45A6P0DMU7 189 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 CT45A5P0DMU8 189 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 CT45A7P0DMV0 189 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 NFYAP23511 347 aaPredicted RBP9.94□□□□□ -0.82
USP40-205ENST00000430158 CD24P25063 80 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 IL3RAP26951 378 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 ETV6P41212 452 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 CDK10Q15131 360 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 ZNF79Q15937 498 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 FAM71F2Q6NXP2 309 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 Q8N6K4 173 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 OR8U1Q8NH10 309 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 C15orf40Q8WUR7 153 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 SMIM4Q8WVI0 70 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 TAF15Q92804 592 aaKnown RBP eCLIP9.94□□□□□ -0.82
USP40-205ENST00000430158 MDFIQ99750 246 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 NABP2Q9BQ15 211 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 MRPL20Q9BYC9 149 aaKnown RBP9.94□□□□□ -0.82
USP40-205ENST00000430158 ZFAND3Q9H8U3 227 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 TNFRSF19Q9NS68 423 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 OR2W1Q9Y3N9 320 aa9.94□□□□□ -0.82
USP40-205ENST00000430158 OR5H8P0DN80 308 aa9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms