RNA–Protein interactions for RNA: ENST00000423061.5

SYNE1-212, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNE1, Length 27,436 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-212ENST00000423061 F2Z2F3 143 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DS3Q14952 304 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 TRAV36DV7A0A075B6V5 113 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 LOC102725191A0A1B0GVB3 256 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 CA7P43166 264 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 DEFB110Q30KQ9 67 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 LTBP3Q9NS15 1303 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ATG2BQ96BY7 2078 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 A0A0J9YW62 118 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SCCPDHQ8NBX0 429 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OR2V1Q8NHB1 315 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SSBP4Q9BWG4 385 aaPredicted RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ANKRD10Q9NXR5 420 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 DEDDO75618 318 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 C3orf79P0CE67 100 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ANOS1P23352 680 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ISG15P05161 165 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 RHBDD2Q6NTF9 364 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SPTBN1Q01082 2364 aaKnown RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 C17orf112F2Z3M2 114 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 GNG3P63215 75 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 VSTM2AQ8TAG5 236 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 MBD3L1Q8WWY6 194 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 K7ERJ3 54 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 IL2RAP01589 272 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 MFAP2P55001 183 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 KIR3DS1Q14943 382 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OTOL1A6NHN0 477 aaPredicted RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF137PP52743 207 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 IL13RA2Q14627 380 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OR2M7Q8NG81 312 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OR8B12Q8NGG6 310 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 UBE2L5PA0A1B0GUS4 154 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 WISP3O95389 354 aaPredicted RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 CCL2P13500 99 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 CD70P32970 193 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PSMB2P49721 201 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PDCD1Q15116 288 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 IZUMO4Q1ZYL8 232 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SPINK9Q5DT21 86 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 BVES-AS1Q5T3Y7 98 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SH2D6Q7Z4S9 175 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 HSD11B1LQ7Z5J1 315 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 C10orf126Q8N4M7 172 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 TEX50A0A1B0GTY4 177 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 TEX48A0A1B0GUV7 120 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 C1QTNF9BB2RNN3 333 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 MDH2P40926 338 aaKnown RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF766Q5HY98 468 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF808Q8N4W9 903 aaPredicted RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 MRPL30Q8TCC3 161 aaKnown RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SPANXDQ9BXN6 97 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 CSN3P07498 182 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 DTWD2Q8NBA8 298 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OR5A1Q8NGJ0 315 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 WDYHV1Q96HA8 205 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 TRIB1Q96RU8 372 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 H3BML4 177 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 K7N7A8 449 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 LINC00869P0C866 280 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PAX1P15863 534 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF117Q03924 483 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SRSF4Q08170 494 aaKnown RBP2.96□□□□□ -1.94
SYNE1-212ENST00000423061 C1QL3Q5VWW1 255 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PLPPR1Q8TBJ4 325 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 TRBV5-7A0A0A0MS05 114 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 A0A1B0GW64 132 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 OR4C46A6NHA9 309 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PPP1CAP62136 330 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SPANXN5Q5MJ07 72 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 R3HDMLQ9H3Y0 253 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SMDT1Q9H4I9 107 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PSG8Q9UQ74 426 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 PRTGQ2VWP7 1150 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 GCSAMLQ5JQS6 135 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 ZBTB34Q8NCN2 500 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 IL1F10Q8WWZ1 152 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 NECAP2Q9NVZ3 263 aa2.96□□□□□ -1.94
SYNE1-212ENST00000423061 SRSF2Q01130 221 aaKnown RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LRRC10Q5BKY1 277 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LOC285556D6RIA3 1793 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 SUMO3P55854 103 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CCL14Q16627 93 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CLEC7AQ9BXN2 247 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LCN2P80188 198 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 MORN4Q8NDC4 146 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 IGSF23A1L1A6 192 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 PITX3O75364 302 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 IRF7Q92985 503 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF764Q96H86 408 aaPredicted RBP2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CLDND1Q9NY35 253 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 LCNL1Q6ZST4 164 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CD207Q9UJ71 328 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 TRBV6-7A0A0A0MS04 114 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 C5orf49A4QMS7 147 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF716A6NP11 495 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 ZNF735P0CB33 412 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 VPREB1P12018 145 aa2.95□□□□□ -1.94
SYNE1-212ENST00000423061 CEACAM16Q2WEN9 425 aa2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 44.4 ms