RNA–Protein interactions for RNA: ENST00000422491.6

USP54-204, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best) BASIC

Gene USP54, Length 2,777 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-204ENST00000422491 FGF23Q9GZV9 251 aaPredicted RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 TMEM38BQ9NVV0 291 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 ERRFI1Q9UJM3 462 aaPredicted RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 CNTRLQ7Z7A1 2325 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 YLPM1P49750 1951 aaKnown RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 UNC13CQ8NB66 2214 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 C11orf94C9JXX5 98 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 ZFAND5O76080 213 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 C1QTNF9P0C862 333 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 MPLP40238 635 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 GNG10P50151 68 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 ZNF585BQ52M93 769 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 C7orf61Q8IZ16 206 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 AGBL5Q8NDL9 886 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 CLDN23Q96B33 292 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 VAMP8Q9BV40 100 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 DNAJC4Q9NNZ3 241 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 CHCHD2Q9Y6H1 151 aaPredicted RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 ADAMTS20P59510 1910 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 A0A1W2PR80 420 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 TCF21O43680 179 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 B4GALT1P15291 398 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 NTF4P34130 210 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 LHX2P50458 406 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 RAB7AP51149 207 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 GNB1P62873 340 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 MYPOPQ86VE0 399 aaPredicted RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 PLXDC1Q8IUK5 500 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 SGMS2Q8NHU3 365 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 NEK7Q8TDX7 302 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 SPSB4Q96A44 273 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 WNT5BQ9H1J7 359 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 RIMS4Q9H426 269 aaPredicted RBP9.07□□□□□ -0.96
USP54-204ENST00000422491 TMEM9BQ9NQ34 198 aa9.07□□□□□ -0.96
USP54-204ENST00000422491 EGR1P18146 543 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 ZNF114Q8NC26 417 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 FGFBP3Q8TAT2 258 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 HSPB9Q9BQS6 159 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 TRBV6-6A0A0A6YYG2 114 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 LMO7DNF2Z398 122 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 RBFOX2O43251 390 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP54-204ENST00000422491 SERF1AO75920 110 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 FFAR4Q5NUL3 377 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 SAXO1Q8IYX7 474 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 C11orf42Q8N5U0 333 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 VN1R17PQ8TDU5 208 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 OR5P3Q8WZ94 311 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 DERL1Q9BUN8 251 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 OR2H1Q9GZK4 316 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 MSL2Q9HCI7 577 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 RYDENQ9NUL5 291 aaKnown RBP9.06□□□□□ -0.96
USP54-204ENST00000422491 MTCH1Q9NZJ7 389 aa9.06□□□□□ -0.96
USP54-204ENST00000422491 ZNF407Q9C0G0 2248 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 LRP5LA4QPB2 252 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 FAM90A26D6RGX4 464 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 DEFA4P12838 97 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 COX5AP20674 150 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 CHRNB4P30926 498 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 PMP22Q01453 160 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 SFRP2Q96HF1 295 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 ZDHHC11Q9H8X9 412 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 CRIM1Q9NZV1 1036 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 ABCA7Q8IZY2 2146 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 KIAA1549Q9HCM3 1950 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 A0A1W2PR77 199 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 PGPEP1LA6NFU8 196 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 PMS2P5A8MQ11 134 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP9.05□□□□□ -0.96
USP54-204ENST00000422491 PDE6DO43924 150 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 CLDN1O95832 211 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 TFF3Q07654 80 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 RLN3Q8WXF3 142 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 SLC35E1Q96K37 410 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 ALKBH3Q96Q83 286 aaPredicted RBP9.05□□□□□ -0.96
USP54-204ENST00000422491 TMEM147Q9BVK8 224 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 SRXN1Q9BYN0 137 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 PATZ1Q9HBE1 687 aaKnown RBP9.05□□□□□ -0.96
USP54-204ENST00000422491 OR1A1Q9P1Q5 309 aa9.05□□□□□ -0.96
USP54-204ENST00000422491 DOCK11Q5JSL3 2073 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 DUX1O43812 170 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 CRYAAP02489 173 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 RBX1P62877 108 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 MSMO1Q15800 293 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 ATP6V1FQ16864 119 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 RAET1LQ5VY80 246 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 WDR74Q6RFH5 385 aaPredicted RBP9.04□□□□□ -0.96
USP54-204ENST00000422491 Q8N976 141 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 OR5AU1Q8NGC0 362 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 CPT1CQ8TCG5 803 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 NPCDR1Q9BY65 106 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 CD207Q9UJ71 328 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 KIAA0100Q14667 2235 aaKnown RBP9.04□□□□□ -0.96
USP54-204ENST00000422491 TRBV20OR9-2A0A075B6H5 130 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 A0A0J9YW62 118 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 NPIPB11E5RHQ5 1161 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 ZIC3O60481 467 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 NDUFB4O95168 129 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 NDUFB8O95169 186 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 TDGF1P13385 188 aa9.04□□□□□ -0.96
USP54-204ENST00000422491 CTRLP40313 264 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms