RNA–Protein interactions for RNA: ENST00000417137.5

SMARCB1-205, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily b, member 1, humanhuman

TSL 3

Gene SMARCB1, Length 889 nt, Biotype protein coding, Subcellular localisation Cytosol, Exosome, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCB1-205ENST00000417137 C11orf54Q9H0W9 315 aaPredicted RBP18.53■□□□□ 0.56
SMARCB1-205ENST00000417137 CCDC59Q9P031 241 aaKnown RBP18.53■□□□□ 0.56
SMARCB1-205ENST00000417137 ST8SIA5O15466 376 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 TSPAN9O75954 239 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 ELK1P19419 428 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 RELBQ01201 579 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 HES1Q14469 280 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 FAM71F2Q6NXP2 309 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 CNIH2Q6PI25 160 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 OR4C13Q8NGP0 309 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 DYNC2LI1Q8TCX1 351 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 CFHR4Q92496 578 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 IFI27L2Q9H2X8 130 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 RANBP3Q9H6Z4 567 aaPredicted RBP18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 ZNF221Q9UK13 617 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 MRPS7Q9Y2R9 242 aaKnown RBP18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 MMP24Q9Y5R2 645 aa18.52■□□□□ 0.56
SMARCB1-205ENST00000417137 CHST1O43916 411 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 OR2F2O95006 317 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 SNRNP70P08621 437 aaKnown RBP18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 CD1BP29016 333 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 PRSS3P35030 304 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 HABP2Q14520 560 aaPredicted RBP18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 Q6ZSV7 163 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 HOGA1Q86XE5 327 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 ODF3L1Q8IXM7 274 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 BEST4Q8NFU0 473 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 TAF15Q92804 592 aaKnown RBP eCLIP18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 RBM14Q96PK6 669 aaKnown RBP18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 AGMATQ9BSE5 352 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 C16orf95Q9H693 158 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 ANXA10Q9UJ72 324 aa18.51■□□□□ 0.55
SMARCB1-205ENST00000417137 IGKV1D-8A0A087WSZ0 117 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 SAA2-SAA4A0A096LPE2 208 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 CLPSL1A2RUU4 121 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 RGS5O15539 181 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 SAA2P0DJI9 122 aaPredicted RBP18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 ZNF833PQ6ZTB9 187 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 C3orf56Q8N813 242 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 SLC25A33Q9BSK2 321 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 PARP12Q9H0J9 701 aaKnown RBP18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 IFT46Q9NQC8 304 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 ADAM30Q9UKF2 790 aa18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 RBM7Q9Y580 266 aaKnown RBP18.5■□□□□ 0.55
SMARCB1-205ENST00000417137 M0QZK8 103 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 IGKV1D-33P01593 117 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 IGKV1-33P01594 117 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 PTHLHP12272 177 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 TMEM11P17152 192 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 MDKP21741 143 aaPredicted RBP18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 OR3A3P47888 321 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 ARPC4P59998 168 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 OR2T10Q8NGZ9 312 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 PRSS22Q9GZN4 317 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 RSL24D1Q9UHA3 163 aaKnown RBP18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 RNF150Q9ULK6 438 aa18.49■□□□□ 0.55
SMARCB1-205ENST00000417137 ZNF701M0R085 212 aaPredicted RBP18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 TPPPO94811 219 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 HLA-DQB1P01920 261 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 GPR12P47775 334 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 EBI3Q14213 229 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 H1FOOQ8IZA3 346 aaPredicted RBP18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 GVQW1Q8N7I0 195 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 LINC01006Q8NI28 216 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 C15orf40Q8WUR7 153 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 ABHD14BQ96IU4 210 aa18.48■□□□□ 0.55
SMARCB1-205ENST00000417137 NBEAL1Q6ZS30 2694 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 IGHV3-72A0A0B4J1Y9 119 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 MOSP00540 346 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 OR8U9P0C7N5 309 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 HNF4GQ14541 408 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 ZNF436-AS1Q8NC38 126 aaPredicted RBP18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 OR8U1Q8NH10 309 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 OR2T6Q8NHC8 308 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 SCPEP1Q9HB40 452 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 EXTL2Q9UBQ6 330 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 RNF114Q9Y508 228 aa18.47■□□□□ 0.55
SMARCB1-205ENST00000417137 RPL39P5Q59GN2 51 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 C11orf88Q6PI97 169 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 SNX29P2Q8IUI4 249 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 EAF1Q96JC9 268 aaPredicted RBP18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 NABP2Q9BQ15 211 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 MRPL20Q9BYC9 149 aaKnown RBP18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 NECAP2Q9NVZ3 263 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 GAB2Q9UQC2 676 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 MOB4Q9Y3A3 225 aa18.46■□□□□ 0.55
SMARCB1-205ENST00000417137 SULT1C2O00338 296 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 CTDSP2O14595 271 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 LSAMPQ13449 338 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 ZNF251Q9BRH9 671 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 RBM38Q9H0Z9 239 aaKnown RBP18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 NDUFA13Q9P0J0 144 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 OR2W1Q9Y3N9 320 aa18.45■□□□□ 0.54
SMARCB1-205ENST00000417137 MEIS3P1A6NDR6 274 aa18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 MC5RP33032 325 aa18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 LUMP51884 338 aaPredicted RBP18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 ARSJQ5FYB0 599 aaPredicted RBP18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 OR5AP2Q8NGF4 316 aa18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 OR8H1Q8NGG4 311 aa18.44■□□□□ 0.54
SMARCB1-205ENST00000417137 SLIRPQ9GZT3 109 aaKnown RBP18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms