RNA–Protein interactions for RNA: ENST00000415148.6

CD44-206, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 2,369 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-206ENST00000415148 COL10A1Q03692 680 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 CLN3Q13286 438 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 RTP5Q14D33 572 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 ABHD17BQ5VST6 288 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 MAFAQ8NHW3 353 aaPredicted RBP8.28□□□□□ -1.08
CD44-206ENST00000415148 GATAD1Q8WUU5 269 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 IL1F10Q8WWZ1 152 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 NANOS1Q8WY41 292 aaKnown RBP8.28□□□□□ -1.08
CD44-206ENST00000415148 TAF15Q92804 592 aaKnown RBP eCLIP8.28□□□□□ -1.08
CD44-206ENST00000415148 SPRY4Q9C004 299 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 POLDIP2Q9Y2S7 368 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 R4GN57 208 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 MUC3AQ02505 3323 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 DOCK11Q5JSL3 2073 aa8.28□□□□□ -1.08
CD44-206ENST00000415148 IGKV1D-33P01593 117 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 IGKV1-33P01594 117 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 AMBPP02760 352 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 ERVK11-1P61568 191 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 TMEM14EPQ6UXP3 125 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 WFIKKN1Q96NZ8 548 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 OR4C12Q96R67 309 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 DDA1Q9BW61 102 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 RBKSQ9H477 322 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 CDH20Q9HBT6 801 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 GP6Q9HCN6 339 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 SLC39A9Q9NUM3 307 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 NAT8Q9UHE5 227 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 TRAPPC2LQ9UL33 140 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PPP1R3CQ9UQK1 317 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 LOXL2Q9Y4K0 774 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PCSK5Q92824 1860 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 MAP1LC3B2A6NCE7 125 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 CEBPZOSA8MTT3 80 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PATE3B3GLJ2 98 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 SH2D1BO14796 132 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 LILRA1O75019 489 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 ZNF737O75373 536 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 MBP02144 154 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 GZMBP10144 247 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 CA6P23280 308 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 ELLP55199 621 aaPredicted RBP8.27□□□□□ -1.09
CD44-206ENST00000415148 ERVS71-1P61550 626 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PKIAP61925 76 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 ZNF146Q15072 292 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 MSMO1Q15800 293 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 MCEMP1Q8IX19 187 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 ZNF664Q8N3J9 261 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 FGFRL1Q8N441 504 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PYGO2Q9BRQ0 406 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 TTTY12Q9BZ98 90 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 MAP1LC3BQ9GZQ8 125 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 PITPNC1Q9UKF7 332 aa8.27□□□□□ -1.09
CD44-206ENST00000415148 RBM7Q9Y580 266 aaKnown RBP8.27□□□□□ -1.09
CD44-206ENST00000415148 TMEM250H0YL14 139 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 SLC31A2O15432 143 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 RHBDL1O75783 438 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 OR2H2O95918 312 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 CELA3AP09093 270 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 DEFA4P12838 97 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 PAX1P15863 534 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 SLC38A11Q08AI6 406 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 TMEM241Q24JQ0 296 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 SPANXN5Q5MJ07 72 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 CYP2G1PQ6ZSU1 146 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 C16orf82Q7Z2V1 217 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 DRAM1Q8N682 238 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 BCL2L2Q92843 193 aaPredicted RBP8.26□□□□□ -1.09
CD44-206ENST00000415148 GPR87Q9BY21 358 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 HSPB7Q9UBY9 170 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 GAB2Q9UQC2 676 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 MED12LQ86YW9 2145 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 COL27A1Q8IZC6 1860 aaPredicted RBP8.26□□□□□ -1.09
CD44-206ENST00000415148 TUBG1P23258 451 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 CEACAM6P40199 344 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 MAGEA5P43359 124 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 RPS16P62249 146 aaKnown RBP8.26□□□□□ -1.09
CD44-206ENST00000415148 TNFRSF9Q07011 255 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 OR1C1Q15619 314 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 FAM53AQ6NSI3 398 aaPredicted RBP8.26□□□□□ -1.09
CD44-206ENST00000415148 NUFIP2Q7Z417 695 aaKnown RBP8.26□□□□□ -1.09
CD44-206ENST00000415148 TGIF2LYQ8IUE0 185 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 TCTEX1D1Q8N7M0 179 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 OR10A7Q8NGE5 316 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 SRD5A3Q9H8P0 318 aa8.26□□□□□ -1.09
CD44-206ENST00000415148 GTF3C1Q12789 2109 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 ST8SIA5O15466 376 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 PSMB3P49720 205 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 MEF2BQ02080 365 aaPredicted RBP8.25□□□□□ -1.09
CD44-206ENST00000415148 MRPL49Q13405 166 aaKnown RBP8.25□□□□□ -1.09
CD44-206ENST00000415148 ADIRFQ15847 76 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 SSX2Q16385 188 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 TBC1D28Q2M2D7 210 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 DBX2Q6ZNG2 339 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 TMEM251Q8N6I4 163 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 ZNF645Q8N7E2 425 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 SCCPDHQ8NBX0 429 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 LHX4Q969G2 390 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 MRPL37Q9BZE1 423 aaKnown RBP8.25□□□□□ -1.09
CD44-206ENST00000415148 PRSS50Q9UI38 385 aa8.25□□□□□ -1.09
CD44-206ENST00000415148 KCNS2Q9ULS6 477 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 34.7 ms