RNA–Protein interactions for RNA: ENST00000414829.2

LIMS1-206, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best) BASIC

Gene LIMS1, Length 439 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-206ENST00000414829 IFT46Q9NQC8 304 aa11.75□□□□□ -0.53
LIMS1-206ENST00000414829 RDH8Q9NYR8 311 aa11.75□□□□□ -0.53
LIMS1-206ENST00000414829 OR1A1Q9P1Q5 309 aa11.75□□□□□ -0.53
LIMS1-206ENST00000414829 ZNF230Q9UIE0 474 aaPredicted RBP11.75□□□□□ -0.53
LIMS1-206ENST00000414829 RBM7Q9Y580 266 aaKnown RBP11.75□□□□□ -0.53
LIMS1-206ENST00000414829 SAA2-SAA4A0A096LPE2 208 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 CCDC160A6NGH7 325 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 FAM25AB3EWG3 89 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 FAM25CB3EWG5 89 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 FAM25GB3EWG6 89 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 ZNF701M0R085 212 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-206ENST00000414829 FGF16O43320 207 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 CHST1O43916 411 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 SNRNP70P08621 437 aaKnown RBP11.74□□□□□ -0.53
LIMS1-206ENST00000414829 SAA2P0DJI9 122 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-206ENST00000414829 REG1BP48304 166 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 TAS2R20P59543 309 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 HERPUD1Q15011 391 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 ARSJQ5FYB0 599 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-206ENST00000414829 SHISA2Q6UWI4 295 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 Q6ZSV7 163 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 TMEM219Q86XT9 240 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 BEST4Q8NFU0 473 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 CYYR1Q96J86 154 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 SCPEP1Q9HB40 452 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 RABL2AQ9UBK7 228 aaPredicted RBP11.74□□□□□ -0.53
LIMS1-206ENST00000414829 ANXA10Q9UJ72 324 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 RABL2BQ9UNT1 228 aa11.74□□□□□ -0.53
LIMS1-206ENST00000414829 IGKV1-6A0A0C4DH72 117 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 OR5H14A6NHG9 310 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 H3BMQ9 156 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 ST8SIA5O15466 376 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 SLC22A5O76082 557 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 MOSP00540 346 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 IGKV1D-33P01593 117 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 IGKV1-33P01594 117 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 EIF4EP06730 217 aaKnown RBP11.73□□□□□ -0.53
LIMS1-206ENST00000414829 GSTT2P0CG29 244 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 GSTT2BP0CG30 244 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 MDKP21741 143 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-206ENST00000414829 MC5RP33032 325 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 PRSS3P35030 304 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 GPR12P47775 334 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 RELBQ01201 579 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 LSAMPQ13449 338 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 EBI3Q14213 229 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 SPCS2Q15005 226 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 IGSF11Q5DX21 431 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 HOGA1Q86XE5 327 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 Q8N2B8 174 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 MAFIPQ8WZ33 124 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 ZNF747Q9BV97 191 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 C11orf54Q9H0W9 315 aaPredicted RBP11.73□□□□□ -0.53
LIMS1-206ENST00000414829 NECAP2Q9NVZ3 263 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 RNF114Q9Y508 228 aa11.73□□□□□ -0.53
LIMS1-206ENST00000414829 SULT1C2O00338 296 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 RGS5O15539 181 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 SSX5O60225 188 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 PEX14O75381 377 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 TAS2R46P59540 309 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 TAGLNQ01995 201 aaKnown RBP11.72□□□□□ -0.53
LIMS1-206ENST00000414829 CBX3Q13185 183 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 DIAPH2-AS1Q14236 149 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 FAM53AQ6NSI3 398 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-206ENST00000414829 CCBE1Q6UXH8 406 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-206ENST00000414829 ODF3L1Q8IXM7 274 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 H1FOOQ8IZA3 346 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-206ENST00000414829 LINC01006Q8NI28 216 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 DYNC2LI1Q8TCX1 351 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 AGMATQ9BSE5 352 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 ELF5Q9UKW6 265 aaPredicted RBP11.72□□□□□ -0.53
LIMS1-206ENST00000414829 GAB2Q9UQC2 676 aa11.72□□□□□ -0.53
LIMS1-206ENST00000414829 HPGDSO60760 199 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 RBBP9O75884 186 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 APOA2P02652 100 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 CD24P25063 80 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 MRPS10P82664 201 aaKnown RBP11.71□□□□□ -0.53
LIMS1-206ENST00000414829 WFDC12Q8WWY7 111 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 BORCS5Q969J3 196 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 ADTRPQ96IZ2 230 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 NABP2Q9BQ15 211 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 MRPL20Q9BYC9 149 aaKnown RBP11.71□□□□□ -0.53
LIMS1-206ENST00000414829 OR2D2Q9H210 308 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 RSL24D1Q9UHA3 163 aaKnown RBP11.71□□□□□ -0.53
LIMS1-206ENST00000414829 OR2W1Q9Y3N9 320 aa11.71□□□□□ -0.53
LIMS1-206ENST00000414829 HAX1O00165 279 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 ELK1P19419 428 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 RCVRNP35243 200 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 VDAC2P45880 294 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-206ENST00000414829 LUMP51884 338 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-206ENST00000414829 ACTBP60709 375 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 EAF1Q96JC9 268 aaPredicted RBP11.7□□□□□ -0.54
LIMS1-206ENST00000414829 ZNF702PQ9H963 129 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 NDUFA13Q9P0J0 144 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 EXTL2Q9UBQ6 330 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 MRPS7Q9Y2R9 242 aaKnown RBP11.7□□□□□ -0.54
LIMS1-206ENST00000414829 WASHC3Q9Y3C0 194 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 CEPT1Q9Y6K0 416 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 STAB1Q9NY15 2570 aa11.7□□□□□ -0.54
LIMS1-206ENST00000414829 IGHV3-72A0A0B4J1Y9 119 aa11.69□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms