RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 PIMREGQ9BSJ6 248 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 SLC25A32Q9H2D1 315 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 MALRD1Q5VYJ5 2156 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 TNFSF13O75888 250 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 IGHV1-46P01743 117 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 OPRK1P41145 380 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 RPL11P62913 178 aaKnown RBP7.69□□□□□ -1.18
LIG4-202ENST00000405925 HIST1H3AP68431 136 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 HIST2H3PS2Q5TEC6 136 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 SLC35E4Q6ICL7 350 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 IGFL2Q6UWQ7 119 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 HIST2H3AQ71DI3 136 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 ZNF680Q8NEM1 530 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 POM121Q96HA1 1249 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 RHOVQ96L33 236 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 NPDC1Q9NQX5 325 aaPredicted RBP7.69□□□□□ -1.18
LIG4-202ENST00000405925 IDI2-AS1Q9NZ38 188 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 MLXQ9UH92 298 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 LOC105371242A0A075B767 164 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 DPRXA6NFQ7 191 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 CHST1O43916 411 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 CDS2O95674 445 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 APELAP0DMC3 54 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 FGF7P21781 194 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 EXOSC2Q13868 293 aaKnown RBP7.69□□□□□ -1.18
LIG4-202ENST00000405925 RHEBQ15382 184 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 RNF144BQ7Z419 303 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 BVESQ8NE79 360 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 NANPQ8TBE9 248 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 NEU4Q8WWR8 484 aaPredicted RBP7.69□□□□□ -1.18
LIG4-202ENST00000405925 SLC25A28Q96A46 364 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 MISP3Q96FF7 219 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 FAM210AQ96ND0 272 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 GHITMQ9H3K2 345 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 HES4Q9HCC6 221 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 UQCC1Q9NVA1 299 aa7.69□□□□□ -1.18
LIG4-202ENST00000405925 CEACAM4O75871 244 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 ARG1P05089 322 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 MELTFP08582 738 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 SLC38A11Q08AI6 406 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 CLEC9AQ6UXN8 241 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 LHX4Q969G2 390 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 OR5B12Q96R08 314 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 NRIP2Q9BQI9 281 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 FKBP11Q9NYL4 201 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 C1RLQ9NZP8 487 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 PTBP3O95758 552 aaKnown RBP7.68□□□□□ -1.18
LIG4-202ENST00000405925 IGKV3-15P01624 115 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 ATF4P18848 351 aaPredicted RBP7.68□□□□□ -1.18
LIG4-202ENST00000405925 COX5AP20674 150 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 S100A7P31151 101 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 CCDC144NLQ6NUI1 221 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 FAM122CQ6P4D5 195 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 OR13A1Q8NGR1 328 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 TMEM230Q96A57 120 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 C5orf66Q9H5L9 145 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 CBLN4Q9NTU7 201 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 FBXL17Q9UF56 701 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 ZNF729A6NN14 1252 aaPredicted RBP7.68□□□□□ -1.18
LIG4-202ENST00000405925 CD74P04233 296 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 LIPFP07098 398 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 DTD1Q8TEA8 209 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 SPSB4Q96A44 273 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 JPT1Q9UK76 154 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 IGKV1-27A0A075B6S5 117 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 TM4SF5O14894 197 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 OR7C2O60412 319 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 S100PP25815 95 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 CEACAM8P31997 349 aaPredicted RBP7.68□□□□□ -1.18
LIG4-202ENST00000405925 IL34Q6ZMJ4 242 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 ABHD12Q8N2K0 398 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 FBLN5Q9UBX5 448 aa7.68□□□□□ -1.18
LIG4-202ENST00000405925 B3GALNT1O75752 331 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 CD200P41217 278 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 DCAF12L2Q5VW00 463 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 PLPPR1Q8TBJ4 325 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 FAM222BQ8WU58 562 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 BARX1Q9HBU1 254 aaPredicted RBP7.67□□□□□ -1.18
LIG4-202ENST00000405925 PUS1Q9Y606 427 aaKnown RBP eCLIP7.67□□□□□ -1.18
LIG4-202ENST00000405925 CHD9Q3L8U1 2897 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 A0A1W2PN81 502 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 MED19A0JLT2 244 aaPredicted RBP7.67□□□□□ -1.18
LIG4-202ENST00000405925 DVL1O14640 695 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 PGLYRP1O75594 196 aaPredicted RBP7.67□□□□□ -1.18
LIG4-202ENST00000405925 GAPDHP04406 335 aaKnown RBP7.67□□□□□ -1.18
LIG4-202ENST00000405925 CHRNA7P36544 502 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 TOR2AQ5JU69 321 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 GTF3AQ92664 365 aaKnown RBP7.67□□□□□ -1.18
LIG4-202ENST00000405925 TMUB1Q9BVT8 246 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 C5orf42Q9H799 3197 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 F8VVB4 439 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 F8VWA3 439 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 CRYBA1P05813 215 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 SELLP14151 372 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 HTR1DP28221 377 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 TMEM33P57088 247 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 SSX2Q16385 188 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 C4orf17Q53FE4 359 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 SOHLH1Q5JUK2 328 aa7.67□□□□□ -1.18
LIG4-202ENST00000405925 NCR3LG1Q68D85 454 aa7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 52.7 ms