RNA–Protein interactions for RNA: ENST00000382723.4

MSX1-201, Transcript of msh homeobox 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene MSX1, Length 1,939 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1-201ENST00000382723 ZNF16P17020 682 aaPredicted RBP22.01■■□□□ 1.11
MSX1-201ENST00000382723 C8orf46Q8TAG6 207 aa22.01■■□□□ 1.11
MSX1-201ENST00000382723 C10orf105Q8TEF2 133 aa22.01■■□□□ 1.11
MSX1-201ENST00000382723 WDR89Q96FK6 387 aaPredicted RBP22.01■■□□□ 1.11
MSX1-201ENST00000382723 IFI27L2Q9H2X8 130 aa22.01■■□□□ 1.11
MSX1-201ENST00000382723 SDHAF2Q9NX18 166 aa22.01■■□□□ 1.11
MSX1-201ENST00000382723 A0A0B4J2A0 478 aa22■■□□□ 1.11
MSX1-201ENST00000382723 A0A1W2PPH5 198 aa22■■□□□ 1.11
MSX1-201ENST00000382723 DBX1A6NMT0 343 aa22■■□□□ 1.11
MSX1-201ENST00000382723 ADAP1O75689 374 aa22■■□□□ 1.11
MSX1-201ENST00000382723 Q3ZCU0 254 aa22■■□□□ 1.11
MSX1-201ENST00000382723 ZNF439Q8NDP4 499 aa22■■□□□ 1.11
MSX1-201ENST00000382723 ONECUT1Q9UBC0 465 aa22■■□□□ 1.11
MSX1-201ENST00000382723 SHPKQ9UHJ6 478 aa22■■□□□ 1.11
MSX1-201ENST00000382723 CELSR2Q9HCU4 2923 aa22■■□□□ 1.11
MSX1-201ENST00000382723 F2RP25116 425 aa22■■□□□ 1.11
MSX1-201ENST00000382723 LY6G6FQ5SQ64 297 aa22■■□□□ 1.11
MSX1-201ENST00000382723 TCTE3Q8IZS6 198 aa22■■□□□ 1.11
MSX1-201ENST00000382723 C11orf42Q8N5U0 333 aa22■■□□□ 1.11
MSX1-201ENST00000382723 GSX2Q9BZM3 304 aa22■■□□□ 1.11
MSX1-201ENST00000382723 C17orf98A8MV24 154 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 LIPFP07098 398 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 HOXB5P09067 269 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 IGHV1-8P0DP01 117 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 RAB7AP51149 207 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 LIAT1Q6ZQX7 453 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 ZBTB34Q8NCN2 500 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 LY6G5BQ8NDX9 201 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 OR5M8Q8NGP6 311 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 RAB39BQ96DA2 213 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 TMEM222Q9H0R3 208 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 METTL8Q9H825 291 aaKnown RBP21.99■■□□□ 1.11
MSX1-201ENST00000382723 ZNRD1Q9P1U0 126 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 MALRD1Q5VYJ5 2156 aa21.99■■□□□ 1.11
MSX1-201ENST00000382723 C13orf42A0A1B0GVH6 325 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 PAX1P15863 534 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 ZFP36P26651 326 aaKnown RBP21.98■■□□□ 1.11
MSX1-201ENST00000382723 LMO4P61968 165 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 MSI2Q96DH6 328 aaKnown RBP21.98■■□□□ 1.11
MSX1-201ENST00000382723 PIPOXQ9P0Z9 390 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 SPG11Q96JI7 2443 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 YLPM1P49750 1951 aaKnown RBP21.98■■□□□ 1.11
MSX1-201ENST00000382723 NDUFS8O00217 210 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 ITGB1BP1O14713 200 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 RPL39P5Q59GN2 51 aa21.98■■□□□ 1.11
MSX1-201ENST00000382723 DOPEY2Q9Y3R5 2298 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 H0Y980 276 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 DLX1P56177 255 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 LCN2P80188 198 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 LYG1Q8N1E2 194 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 LHFPL5Q8TAF8 219 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 FAM216AQ8WUB2 273 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 SEC22AQ96IW7 307 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 PDCD10Q9BUL8 212 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 RAB18Q9NP72 206 aa21.97■■□□□ 1.11
MSX1-201ENST00000382723 IGHV4-30-2A0A087WSY4 118 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 C5orf51A6NDU8 294 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 KIAA1324LA8MWY0 1029 aaPredicted RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 OR2A4O95047 310 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 GIPP09681 153 aaPredicted RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 PRB3Q04118 309 aaPredicted RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 MSMO1Q15800 293 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 ZFP69Q49AA0 526 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 SLC25A48Q6ZT89 311 aaKnown RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 LGI3Q8N145 548 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 OR2A7Q96R45 310 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 SESN1Q9Y6P5 492 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 HLA-GP17693 338 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 EIF2B2P49770 351 aaKnown RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 LINC00205P59089 165 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 RPL30P62888 115 aaKnown RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 CENPEQ02224 2701 aa21.96■■□□□ 1.11
MSX1-201ENST00000382723 EIF4EBP1Q13541 118 aaPredicted RBP21.96■■□□□ 1.11
MSX1-201ENST00000382723 RNF212BA8MTL3 300 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 MPTX1A8MV57 137 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 PROP1O75360 226 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 ARF6P62330 175 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 OR2B11Q5JQS5 317 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 TMEM268Q5VZI3 342 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 LYZL2Q7Z4W2 148 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 OR2T35Q8NGX2 323 aa21.95■■□□□ 1.1
MSX1-201ENST00000382723 LIN7CQ9NUP9 197 aaKnown RBP21.95■■□□□ 1.1
MSX1-201ENST00000382723 SAA2-SAA4A0A096LPE2 208 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 VWC2LB2RUY7 222 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 M0R1X1 148 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 SAA2P0DJI9 122 aaPredicted RBP21.94■■□□□ 1.1
MSX1-201ENST00000382723 UCP1P25874 307 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 NKX2-5P52952 324 aaPredicted RBP21.94■■□□□ 1.1
MSX1-201ENST00000382723 GSG1LQ6UXU4 331 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 ZNF695Q8IW36 515 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 TCTEX1D2Q8WW35 142 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 TMEM133Q9H2Q1 129 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 IGHV4-61A0A0C4DH41 118 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 RAB29O14966 203 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 SERPINE2P07093 398 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 C1orf229Q6ZS94 237 aaPredicted RBP21.94■■□□□ 1.1
MSX1-201ENST00000382723 ODF3L1Q8IXM7 274 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 LRTM2Q8N967 370 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 C18orf12Q96KH6 178 aa21.94■■□□□ 1.1
MSX1-201ENST00000382723 hCG_1809904A0A1W2PP81 198 aa21.93■■□□□ 1.1
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms