RNA–Protein interactions for RNA: ENST00000381835.9

CIITA-202, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 1 (best) BASIC

Gene CIITA, Length 2,344 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-202ENST00000381835 UMAD1C9J7I0 102 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 OR5AC1P0C628 307 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 ZNF728P0DKX0 622 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 CHATP28329 748 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 P2RY1P47900 373 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 ERVK11-1P61568 191 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 MUC15Q8N387 334 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 CD300LFQ8TDQ1 290 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 LRRC29Q8WV35 223 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 TCEAL7Q9BRU2 100 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 GINS3Q9BRX5 216 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 WFDC1Q9HC57 220 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 GSN-AS1Q9NRJ2 163 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 NECAP2Q9NVZ3 263 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 TREM2Q9NZC2 230 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 METTL1Q9UBP6 276 aaKnown RBP10.43□□□□□ -0.74
CIITA-202ENST00000381835 DCHS2Q6V1P9 2916 aa10.43□□□□□ -0.74
CIITA-202ENST00000381835 hCG_1809904A0A1W2PP81 198 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 A0A1W2PR64 198 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 A0A1W2PRV1 198 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 HSPB6O14558 160 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 PDCD6O75340 191 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 FXYD4P59646 89 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 GPR157Q5UAW9 335 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 LYZL2Q7Z4W2 148 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 FAM24BQ8N5W8 94 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 FAM222BQ8WU58 562 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 RTN4IP1Q8WWV3 396 aaPredicted RBP10.42□□□□□ -0.74
CIITA-202ENST00000381835 DYRK2Q92630 601 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 SCRT1Q9BWW7 348 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 LIME1Q9H400 295 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 NAA60Q9H7X0 242 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 AKAP6Q13023 2319 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 B9A039 149 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 ZNF205O95201 554 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 PTBP3O95758 552 aaKnown RBP10.42□□□□□ -0.74
CIITA-202ENST00000381835 ARG1P05089 322 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 IGFBP2P18065 325 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 FUT3P21217 361 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 PMELP40967 661 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 SULT1A1P50225 295 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 TMEM187Q14656 261 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 ZNF124Q15973 351 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 RSRP1Q9BUV0 290 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 PBDC1Q9BVG4 233 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 SH3BGRL3Q9H299 93 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 SEBOXQ9HB31 216 aaPredicted RBP10.42□□□□□ -0.74
CIITA-202ENST00000381835 GCM1Q9NP62 436 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 OR14J1Q9UGF5 321 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 AK3Q9UIJ7 227 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 HSF4Q9ULV5 492 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 STRAPQ9Y3F4 350 aaKnown RBP10.42□□□□□ -0.74
CIITA-202ENST00000381835 FBXO7Q9Y3I1 522 aa10.42□□□□□ -0.74
CIITA-202ENST00000381835 UTP20O75691 2785 aaKnown RBP10.42□□□□□ -0.74
CIITA-202ENST00000381835 A0A1B0GV50 99 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 HS3ST1O14792 307 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 RAB5CP51148 216 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 RHEBQ15382 184 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 EFNB3Q15768 340 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 MPV17LQ2QL34 196 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 MEX3BQ6ZN04 569 aaKnown RBP10.41□□□□□ -0.74
CIITA-202ENST00000381835 HSD17B11Q8NBQ5 300 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 DIRC2Q96SL1 478 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 SLC35B3Q9H1N7 401 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A10PA6NDY2 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A18PA6NE21 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A16PA6NEW6 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A20PA6NIJ5 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A8PA6NJQ4 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A7PA6NKC0 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A22PA8MWA6 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A12PA8MX19 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A5PA8MXJ8 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A23PA8MXZ1 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A15PP0C7V4 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A13PP0C7W8 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A14PP0C7W9 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 FAM90A24PP0C7X0 464 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 OR13C7P0DN81 318 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 NQO2P16083 231 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 GATA4P43694 442 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 OR2B8PP59922 312 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 NHLH2Q02577 135 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 PHLDA2Q53GA4 152 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 LIAT1Q6ZQX7 453 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 STX12Q86Y82 276 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 OR52M1Q8NGK5 317 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 TCTEX1D2Q8WW35 142 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 RDH5Q92781 318 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 GALNT14Q96FL9 552 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 SUCNR1Q9BXA5 334 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 MS4A5Q9H3V2 200 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 HES4Q9HCC6 221 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 PPP1R3CQ9UQK1 317 aa10.41□□□□□ -0.74
CIITA-202ENST00000381835 TRAV20A0A0B4J274 112 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 A0A1W2PPE2 198 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 FAM221AA4D161 298 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 H7C1Q1 480 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 DEGS1O15121 323 aa10.4□□□□□ -0.74
CIITA-202ENST00000381835 TXNL1O43396 289 aa10.4□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms