RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 VSIRQ9H7M9 311 aa11.21□□□□□ -0.61
CCDC3-202ENST00000378839 DIDO1Q9BTC0 2240 aaKnown RBP11.21□□□□□ -0.62
CCDC3-202ENST00000378839 CEACAM4O75871 244 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 SLC25A6P12236 298 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 SSTR5P35346 364 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 HAGHQ16775 308 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 MRGPRDQ8TDS7 321 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 ATP5SQ99766 215 aa11.21□□□□□ -0.62
CCDC3-202ENST00000378839 SVILO95425 2214 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 HBZP02008 142 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 FOSL1P15407 271 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 EGR1P18146 543 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF808Q8N4W9 903 aaPredicted RBP11.2□□□□□ -0.62
CCDC3-202ENST00000378839 CD177Q8N6Q3 437 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 LSM10Q969L4 123 aaKnown RBP11.2□□□□□ -0.62
CCDC3-202ENST00000378839 RSG1Q9BU20 258 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 RBM7Q9Y580 266 aaKnown RBP11.2□□□□□ -0.62
CCDC3-202ENST00000378839 TIMM8AO60220 97 aaPredicted RBP11.2□□□□□ -0.62
CCDC3-202ENST00000378839 YIF1AO95070 293 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 METTL15P1P0C7V9 234 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 KITLGP21583 273 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 COL10A1Q03692 680 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 BAXQ07812 192 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 FGFRL1Q8N441 504 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 COMMD1Q8N668 190 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 OR13A1Q8NGR1 328 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF251Q9BRH9 671 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 CXXC4Q9H2H0 198 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 KPTNQ9Y664 436 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 A0A1W2PPH5 198 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 C7orf77A4D0Y5 90 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 BTNL3Q6UXE8 466 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 SSX7Q7RTT5 188 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 C1orf162Q8NEQ5 155 aaPredicted RBP11.2□□□□□ -0.62
CCDC3-202ENST00000378839 SARAFQ96BY9 339 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 OR2D2Q9H210 308 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 PRO1933Q9H354 126 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 KCNJ16Q9NPI9 418 aa11.2□□□□□ -0.62
CCDC3-202ENST00000378839 IGHV3-43A0A0B4J1X8 118 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 SYNGR2O43760 224 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 IGHV3-43DP0DP04 118 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 CEACAM1P13688 526 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 SULT1A1P50225 295 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 UTF1Q5T230 341 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 ALKBH2Q6NS38 261 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 C22orf34Q6ZV56 151 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 RFESDQ8TAC1 157 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 S100PBPQ96BU1 408 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 MEGF10Q96KG7 1140 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 TMEM30CPA0ZSE6 113 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 UMAD1C9J7I0 102 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 S100A12P80511 92 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 THNSL2Q86YJ6 484 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 SLC25A15Q9Y619 301 aa11.19□□□□□ -0.62
CCDC3-202ENST00000378839 DMXL2Q8TDJ6 3036 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 C17orf98A8MV24 154 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 DEFB108AA8MXU0 73 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 P0C879 139 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 HOXB1P14653 301 aaPredicted RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 G6PCP35575 357 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF474Q6S9Z5 364 aaPredicted RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 FAM24BQ8N5W8 94 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 RNASE11Q8TAA1 199 aaKnown RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 SLC35B3Q9H1N7 401 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 FAM215AQ9Y5M1 114 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 A0A1B0GW64 132 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 A0A1B0GWJ7 208 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 TAS2R30P59541 319 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF726P1Q15940 193 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 SLC35E4Q6ICL7 350 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 BHLHA15Q7RTS1 189 aaPredicted RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF525Q8N782 197 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF645Q8N7E2 425 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 PSENENQ9NZ42 101 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 WSB1Q9Y6I7 421 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 CACNA1DQ01668 2161 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 CXorf65A6NEN9 183 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 RBFOX3A6NFN3 312 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 OR5H1A6NKK0 313 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 CLN5O75503 358 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 S100GP29377 79 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 HOXC12P31275 282 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 ZNF816Q0VGE8 651 aaPredicted RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 MBNL2Q5VZF2 373 aaKnown RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 HIST1H2BAQ96A08 127 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 GALMQ96C23 342 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 RBMXL1Q96E39 390 aaKnown RBP11.18□□□□□ -0.62
CCDC3-202ENST00000378839 RAB40CQ96S21 281 aa11.18□□□□□ -0.62
CCDC3-202ENST00000378839 LINC00473A8K010 186 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 AHRRA9YTQ3 701 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 PROP1O75360 226 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 GABRA2P47869 451 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 ICAM4Q14773 271 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 DMRTC2Q8IXT2 367 aaPredicted RBP11.17□□□□□ -0.62
CCDC3-202ENST00000378839 PRR7Q8TB68 274 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 PLPPR2Q96GM1 343 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 LIN7CQ9NUP9 197 aaKnown RBP11.17□□□□□ -0.62
CCDC3-202ENST00000378839 USF3Q68DE3 2245 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 C15orf65H3BRN8 121 aa11.17□□□□□ -0.62
CCDC3-202ENST00000378839 S1PR2O95136 353 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms