RNA–Protein interactions for RNA: ENST00000351842.8

USP4-202, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 1 (best) BASIC

Gene USP4, Length 3,222 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-202ENST00000351842 SLC5A7Q9GZV3 580 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 DPAGT1Q9H3H5 408 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 CCL28Q9NRJ3 127 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 KBTBD11-OT1A0A1B0GTJ5 212 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 OR5H14A6NHG9 310 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 LEUTXA8MZ59 168 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 TOX4O94842 621 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 DHFRP00374 187 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 ZBTB25P24278 435 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 AP3S2P59780 193 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 SLC9A3R2Q15599 337 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 ABCA11PQ4W5N1 156 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 OR52B4Q8NGK2 314 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 BEX4Q9NWD9 120 aaPredicted RBP7.56□□□□□ -1.2
USP4-202ENST00000351842 ANKRD20A5PA0PJZ0 165 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A10PA6NDY2 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A18PA6NE21 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A16PA6NEW6 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A20PA6NIJ5 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A8PA6NJQ4 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A7PA6NKC0 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A22PA8MWA6 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A12PA8MX19 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A5PA8MXJ8 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A23PA8MXZ1 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 G3V3Q6 166 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 ENSAO43768 121 aaKnown RBP7.56□□□□□ -1.2
USP4-202ENST00000351842 NXPH3O95157 252 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 MSMBP08118 114 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A15PP0C7V4 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A13PP0C7W8 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A14PP0C7W9 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAM90A24PP0C7X0 464 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 FAUP35544 74 aaKnown RBP7.56□□□□□ -1.2
USP4-202ENST00000351842 ZNF134P52741 427 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 C17orf58Q2M2W7 97 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 TMEM155Q4W5P6 130 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 VMO1Q7Z5L0 202 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 LHFPL4Q7Z7J7 247 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 ABHD12Q8N2K0 398 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 GAL3ST2Q9H3Q3 398 aa7.56□□□□□ -1.2
USP4-202ENST00000351842 TEX13DA0A0J9YY54 714 aaPredicted RBP7.55□□□□□ -1.2
USP4-202ENST00000351842 DISC1C4P0D8 188 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 DIRAS3O95661 229 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 ARG1P05089 322 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 MELTFP08582 738 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 GZMHP20718 246 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 TAS2R46P59540 309 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 S100A12P80511 92 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 FCN2Q15485 313 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 SSX9Q7RTT3 188 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 C15orf40Q8WUR7 153 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 YAE1D1Q9NRH1 226 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 SCP2D1Q9UJQ7 156 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 CR1P17927 2039 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 NAP1L6A6NFF2 107 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 SNAPC5O75971 98 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 PPYP01298 95 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 LGALS4P56470 323 aa7.55□□□□□ -1.2
USP4-202ENST00000351842 MRPS11P82912 194 aaKnown RBP7.55□□□□□ -1.2
USP4-202ENST00000351842 ADAD2Q8NCV1 583 aaKnown RBP7.55□□□□□ -1.2
USP4-202ENST00000351842 H7C2Y5 167 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 PRAF2O60831 178 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 FOXH1O75593 365 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 GOSR1O95249 250 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 AVPP01185 164 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 MRPS10P82664 201 aaKnown RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 HES1Q14469 280 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 ATPAF1Q5TC12 328 aaPredicted RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 KCTD9Q7L273 389 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 GAPTQ8N292 157 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 TAF15Q92804 592 aaKnown RBP eCLIP7.54□□□□□ -1.2
USP4-202ENST00000351842 OR51J1Q9H342 316 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 LINC00312Q9Y6C7 94 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 TRAV20A0A0B4J274 112 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 M0R1X1 148 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 NDUFS6O75380 124 aaKnown RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 IGHV1-8P0DP01 117 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 IGHV4-38-2P0DP08 117 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 ANXA3P12429 323 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 DTYMKP23919 212 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 GPR12P47775 334 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 TMEM186Q96B77 213 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 MED28Q9H204 178 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 PFDN2Q9UHV9 154 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 MDFIC2A0A1B0GVS7 189 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 B4DSR2 109 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 SULT1C2O00338 296 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 ECDO95905 644 aaPredicted RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 FPR2P25090 351 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 SRSF2Q01130 221 aaKnown RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 TEX261Q6UWH6 196 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 SPNS3Q6ZMD2 512 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 OVCH2Q7RTZ1 564 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 KRTAP1-3Q8IUG1 177 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 RIMS4Q9H426 269 aaPredicted RBP7.54□□□□□ -1.2
USP4-202ENST00000351842 RHOFQ9HBH0 211 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 IDI2-AS1Q9NZ38 188 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 KAAG1Q9UBP8 84 aa7.54□□□□□ -1.2
USP4-202ENST00000351842 U3KQ87 197 aa7.54□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms