RNA–Protein interactions for RNA: ENST00000341753.10

TRIM28-202, Transcript of tripartite motif containing 28, humanhuman

TSL 1 (best) BASIC

Gene TRIM28, Length 2,709 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-202ENST00000341753 TAF15Q92804 592 aaKnown RBP eCLIP18.97■□□□□ 0.631e-6■□□□□ 9.7
TRIM28-202ENST00000341753 THOC3Q96J01 351 aaKnown RBP18.97■□□□□ 0.63
TRIM28-202ENST00000341753 OR4F4Q96R69 305 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 NCKAP5O14513 1909 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 LILRA1O75019 489 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 NGFP01138 241 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FOLR3P41439 243 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 CASP6P55212 293 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 FOXG1P55316 489 aaPredicted RBP18.97■□□□□ 0.63
TRIM28-202ENST00000341753 ACSM6Q6P461 480 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 TMEM105Q8N8V8 129 aa18.97■□□□□ 0.63
TRIM28-202ENST00000341753 TRAV24A0A0B4J272 114 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 WDR1O75083 606 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 IGLV2-14P01704 120 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 SERF2P84101 59 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 SLC38A11Q08AI6 406 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 MRPL41Q8IXM3 137 aaKnown RBP18.96■□□□□ 0.63
TRIM28-202ENST00000341753 PYGO2Q9BRQ0 406 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 RNF150Q9ULK6 438 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 TP53TG5Q9Y2B4 290 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 G0S2P27469 103 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 SPCS3P61009 180 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 NOL4LQ96MY1 436 aaPredicted RBP18.96■□□□□ 0.63
TRIM28-202ENST00000341753 REPIN1Q9BWE0 567 aaKnown RBP18.96■□□□□ 0.63
TRIM28-202ENST00000341753 PRRG4Q9BZD6 226 aa18.96■□□□□ 0.63
TRIM28-202ENST00000341753 A0A1B0GUS0 222 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 MLF1P58340 268 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 SRSF7Q16629 238 aaKnown RBP eCLIP18.95■□□□□ 0.629e-7■□□□□ 10.6
TRIM28-202ENST00000341753 CEACAM21Q3KPI0 293 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 PRDM14Q9GZV8 571 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 SH2D2AQ9NP31 389 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 ZNF503-AS2A6NEH8 195 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 CLDN1O95832 211 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 ARF1P84077 181 aaKnown RBP18.95■□□□□ 0.62
TRIM28-202ENST00000341753 PMP22Q01453 160 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 SLC10A1Q14973 349 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 ZNF585BQ52M93 769 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 CYB5R2Q6BCY4 276 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 TECTAO75443 2155 aa18.95■□□□□ 0.62
TRIM28-202ENST00000341753 FAM3BP58499 235 aaPredicted RBP18.94■□□□□ 0.62
TRIM28-202ENST00000341753 CHRNA7P36544 502 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 OR51I2Q9H344 312 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 ASPMQ8IZT6 3477 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 KNTC1P50748 2209 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 HRASP01112 189 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 EGR1P18146 543 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 HOXA6P31267 233 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 PSMB3P49720 205 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 LRP11Q86VZ4 500 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 CBLN4Q9NTU7 201 aa18.94■□□□□ 0.62
TRIM28-202ENST00000341753 ESPL1Q14674 2120 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 IGHV3-64DA0A0J9YX35 117 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 SLC25A6P12236 298 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 SRYQ05066 204 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 TIPARPQ7Z3E1 657 aaKnown RBP18.93■□□□□ 0.62
TRIM28-202ENST00000341753 TMEM170AQ8WVE7 144 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 NEU1Q99519 415 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 RHBDL1O75783 438 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 GYPAP02724 150 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 PAX5Q02548 391 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 FIP1L1Q6UN15 594 aaKnown RBP18.93■□□□□ 0.62
TRIM28-202ENST00000341753 COLCA1Q6ZS62 124 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 PPP1R32Q7Z5V6 425 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 PINX1Q96BK5 328 aaKnown RBP18.93■□□□□ 0.62
TRIM28-202ENST00000341753 AGMATQ9BSE5 352 aa18.93■□□□□ 0.62
TRIM28-202ENST00000341753 SOX15O60248 233 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 NUTF2P61970 127 aaKnown RBP18.92■□□□□ 0.62
TRIM28-202ENST00000341753 TEX38Q6PEX7 206 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 MRPL37Q9BZE1 423 aaKnown RBP18.92■□□□□ 0.62
TRIM28-202ENST00000341753 DLL3Q9NYJ7 618 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 C1QTNF9BB2RNN3 333 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 CER1O95813 267 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 GCGP01275 180 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 COA6Q5JTJ3 125 aaKnown RBP18.92■□□□□ 0.62
TRIM28-202ENST00000341753 C1orf210Q8IVY1 113 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 OR2T10Q8NGZ9 312 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 DEPPQ9NTK1 212 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 FAM186AA6NE01 2351 aa18.92■□□□□ 0.62
TRIM28-202ENST00000341753 DOCK7Q96N67 2140 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 PAGE4O60829 102 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 SRD5A2P31213 254 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 TGIF2LYQ8IUE0 185 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 LSM10Q969L4 123 aaKnown RBP18.91■□□□□ 0.62
TRIM28-202ENST00000341753 TMEM9BQ9NQ34 198 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 PINLYPA6NC86 204 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 B4E171 279 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 P04436 131 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 TSPAN7P41732 249 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 LBHQ53QV2 105 aaPredicted RBP18.91■□□□□ 0.62
TRIM28-202ENST00000341753 ACTL10Q5JWF8 245 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 RIPPLY2Q5TAB7 128 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 SNHG12Q9BXW3 62 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 CLN8Q9UBY8 286 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 PRRC2CQ9Y520 2896 aaKnown RBP18.91■□□□□ 0.62
TRIM28-202ENST00000341753 DOCK11Q5JSL3 2073 aa18.91■□□□□ 0.62
TRIM28-202ENST00000341753 DOCK10Q96BY6 2186 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 LOC400499M0QZD8 3231 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 SIRPB1O00241 398 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 SCGB1D1O95968 90 aa18.9■□□□□ 0.62
TRIM28-202ENST00000341753 DUSP3P51452 185 aaPredicted RBP18.9■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms