RNA–Protein interactions for RNA: ENST00000339859.8

USP54-201, Transcript of ubiquitin specific peptidase 54, humanhuman

APPRIS P1 TSL 5 BASIC

Gene USP54, Length 6,247 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-201ENST00000339859 CLEC18BQ6UXF7 455 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 ZNRF4Q8WWF5 429 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 NPFFR1Q9GZQ6 430 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 PI4KAP42356 2102 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 A0A1W2PS18 150 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 ETV2O00321 342 aaPredicted RBP8.59□□□□□ -1.03
USP54-201ENST00000339859 SOX15O60248 233 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 DNM1P46Q6ZS02 220 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 TM2D1Q9BX74 207 aa8.59□□□□□ -1.03
USP54-201ENST00000339859 A0A1W2PP11 408 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 MMP7P09237 267 aaPredicted RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 FFAR4Q5NUL3 377 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 C11orf87Q6NUJ2 197 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 TMEM14DPA8MWL7 114 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 RHOBP62745 196 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 KIAA1324LA8MWY0 1029 aaPredicted RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 SMLR1H3BR10 107 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 HIST1H1BP16401 226 aaKnown RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 Q5PR19 223 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 RBPMS2Q6ZRY4 209 aaKnown RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 BTF3L4Q96K17 158 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 TPPP3Q9BW30 176 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 BRWD1Q9NSI6 2320 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 CST7O76096 145 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 VDAC2P45880 294 aaPredicted RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 FOXG1P55316 489 aaPredicted RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 TMEM50BP56557 158 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 FAM106AQ4KMX7 169 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 ALKAL2Q6UX46 152 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 WDR31Q8NA23 367 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 MED9Q9NWA0 146 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 P2RY1P47900 373 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 CNN1P51911 297 aaKnown RBP8.58□□□□□ -1.04
USP54-201ENST00000339859 CD200R1LQ6Q8B3 271 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 EEF1AKMT3Q96AZ1 226 aa8.58□□□□□ -1.04
USP54-201ENST00000339859 OR2A4O95047 310 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 ASPHD2Q6ICH7 369 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 WDFY1Q8IWB7 410 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 KCNRGQ8N5I3 272 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 SCARB1Q8WTV0 552 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 OR2A7Q96R45 310 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 BEX4Q9NWD9 120 aaPredicted RBP8.57□□□□□ -1.04
USP54-201ENST00000339859 NPIPB11E5RHQ5 1161 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 TRIM77I1YAP6 450 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 C1QBP02746 253 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 ORM2P19652 201 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 NPY1RP25929 384 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LAMTOR1Q6IAA8 161 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 PDPNQ86YL7 162 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LYZL4Q96KX0 146 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LYNX1G3V0Z9 82 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 APOC3P02656 99 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 PDGFAP04085 211 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 APELAP0DMC3 54 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LYNX1P0DP58 116 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 SSTR5P35346 364 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LRP11Q86VZ4 500 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 LEAP2Q969E1 77 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 ATP5SQ99766 215 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 TMEM208Q9BTX3 173 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 CHRDL1Q9BU40 450 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 KCNK7Q9Y2U2 307 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 DPRXA6NFQ7 191 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 UMAD1C9J7I0 102 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 TMEM178BH3BS89 294 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 PIN1P1O15428 100 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 PRB1P04280 392 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 KLF9Q13886 244 aaPredicted RBP8.57□□□□□ -1.04
USP54-201ENST00000339859 OXA1LQ15070 435 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 FOXB2Q5VYV0 432 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 FOXL2NBQ6ZUU3 175 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 PRSS22Q9GZN4 317 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 MIXL1Q9H2W2 232 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 CDS2O95674 445 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 UQCRFS1P47985 274 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 UBE2KP61086 200 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 HIST3H3Q16695 136 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 MOGAT2Q3SYC2 334 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 COLCA1Q6ZS62 124 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 HSD17B13Q7Z5P4 300 aaPredicted RBP8.57□□□□□ -1.04
USP54-201ENST00000339859 OR2C3Q8N628 320 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 ELOVL1Q9BW60 279 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 ADAMTS9Q9P2N4 1935 aa8.57□□□□□ -1.04
USP54-201ENST00000339859 BCL2L11O43521 198 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 LCN15Q6UWW0 184 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 RPS10P5Q9NQ39 176 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 TMA7Q9Y2S6 64 aaKnown RBP8.56□□□□□ -1.04
USP54-201ENST00000339859 MMP24Q9Y5R2 645 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 V9GYH0 126 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 TRAV30A0A087WSZ9 112 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 A0A1B0GTI1 187 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 E7EQL1 145 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 TNFSF13O75888 250 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 IGKV3-15P01624 115 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 OR4C12Q96R67 309 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 METTL26Q96S19 204 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SLC25A32Q9H2D1 315 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 SLC25A17O43808 307 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 MOSP00540 346 aa8.56□□□□□ -1.04
USP54-201ENST00000339859 FXYD3Q14802 87 aa8.56□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 79.1 ms