RNA–Protein interactions for RNA: ENST00000331194.8

CCDC88C-201, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 5 BASIC

Gene CCDC88C, Length 3,104 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-201ENST00000331194 LHFPL2Q6ZUX7 228 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 FGFBP3Q8TAT2 258 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 IL1F10Q8WWZ1 152 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 ERRFI1Q9UJM3 462 aaPredicted RBP11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 PXMP4Q9Y6I8 212 aa11.44□□□□□ -0.58
CCDC88C-201ENST00000331194 LOC400499M0QZD8 3231 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 IGHEP01854 428 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 CDKN1BP46527 198 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 RAB40CQ96S21 281 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 FAM103A1Q9BTL3 118 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 PPP1R3CQ9UQK1 317 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 URB1O60287 2271 aaKnown RBP11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 TYMSP04818 313 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 UMODP07911 640 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 CBLN1P23435 193 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 CHRNB4P30926 498 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 NTF4P34130 210 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 SERF2P84101 59 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 SGMS2Q8NHU3 365 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 ANAPC16Q96DE5 110 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 PSMG3Q9BT73 122 aaPredicted RBP11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 ULBP2Q9BZM5 246 aa11.43□□□□□ -0.58
CCDC88C-201ENST00000331194 CD300LBA8K4G0 201 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 H0Y980 276 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 CCL25O15444 150 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 SERF1AO75920 110 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 IGKV1-5P01602 117 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 B4GALT1P15291 398 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 CRYGSP22914 178 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 SUMO3P55854 103 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 Q6ZSR3 168 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 STPG4Q8N801 248 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 OR2M3Q8NG83 312 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 WDYHV1Q96HA8 205 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 REPIN1Q9BWE0 567 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 GTF3C1Q12789 2109 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 WNT2P09544 360 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 DRD1P21728 446 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 THBS3P49746 956 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 SLC38A11Q08AI6 406 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 OR10G9Q8NGN4 311 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 OR10G7Q8NGN6 311 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 VAMP8Q9BV40 100 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 GPR27Q9NS67 375 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 ZFP30Q9Y2G7 519 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 CFAP47Q6ZTR5 3102 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 COL5A1P20908 1838 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 TRAV34A0A0B4J273 112 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 LNP1A1A4G5 178 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 NPIPA2E9PIF3 369 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 NPIPA3F8WFD2 350 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 HS3ST1O14792 307 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 RBFOX2O43251 390 aaKnown RBP eCLIP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF32P17041 273 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 SRP14P37108 136 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 IGFBP7Q16270 282 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 KCNIP4Q6PIL6 250 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 NUFIP2Q7Z417 695 aaKnown RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 NFAM1Q8NET5 270 aaPredicted RBP11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 HLA-CQ95604 372 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 C10orf35Q96D05 121 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF488Q96MN9 340 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 RPH3ALQ9UNE2 315 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 FREM1Q5H8C1 2179 aa11.42□□□□□ -0.58
CCDC88C-201ENST00000331194 DUXBA0A1W2PPF3 345 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 TMEM250H0YL14 139 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 SYNGR3O43761 229 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 TUSC2O75896 110 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 NDUFB4O95168 129 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 NDUFB8O95169 186 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 ATP5G3P48201 142 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 TFF3Q07654 80 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 OR8B8Q15620 311 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 GCSAMLQ5JQS6 135 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 PCSK4Q6UW60 755 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 LINC01551Q86U37 167 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 SGCZQ96LD1 299 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 C20orf144Q9BQM9 153 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 UBE2ZQ9H832 354 aaPredicted RBP11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 OR1A1Q9P1Q5 309 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 PPP1CBP62140 327 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 TEX43Q6ZNM6 134 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 ANKRD37Q7Z713 158 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 ZNF709Q8N972 641 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 ADPRHL1Q8NDY3 354 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 VPS25Q9BRG1 176 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 ZDHHC11Q9H8X9 412 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 RNF150Q9ULK6 438 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 RNF24Q9Y225 148 aa11.41□□□□□ -0.58
CCDC88C-201ENST00000331194 EP300Q09472 2414 aaPredicted RBP11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 A0A1B0GX78 115 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 C11orf94C9JXX5 98 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 BLKP51451 505 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 FUT6P51993 359 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 GNB1P62873 340 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 SLC25A53Q5H9E4 307 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 C10orf128Q5T292 105 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 OR1F12Q8NHA8 337 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 RDH5Q92781 318 aa11.4□□□□□ -0.58
CCDC88C-201ENST00000331194 TMEM54Q969K7 222 aa11.4□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms