RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 SP9P0CG40 484 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 MARCH3Q86UD3 253 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 ZBTB34Q8NCN2 500 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 C8orf46Q8TAG6 207 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 RNF183Q96D59 192 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SEMA5BQ9P283 1151 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 HIGD1AQ9Y241 93 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 INSL5Q9Y5Q6 135 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 C9JAW5 83 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PYCARD-AS1I3L0S3 204 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 GPR25O00155 361 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 CXorf1O96002 111 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 GPX1P07203 203 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 C10orf111Q8N326 155 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNF664Q8N3J9 261 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 MARVELD1Q9BSK0 173 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 CLEC7AQ9BXN2 247 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 ST6GALNAC2Q9UJ37 374 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 LINC00527Q9UJ94 153 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 COA3Q9Y2R0 106 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PRSS21Q9Y6M0 314 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 MYH1P12882 1939 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 ZNF250P15622 560 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 CRYBB1P53674 252 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 RPS4XP62701 263 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 ST3GAL2Q16842 350 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM211Q6ICI0 200 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SFXN3Q9BWM7 321 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SPANXA1Q9NS26 97 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 WNT7AO00755 349 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 LANCL1O43813 399 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 FGF18O76093 207 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 CCL11P51671 97 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 COL10A1Q03692 680 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 C1orf195Q5TG92 126 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM42Q69YG0 159 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 GATAD1Q8WUU5 269 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SLC35A4Q96G79 324 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SLAMF8Q9P0V8 285 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PPT2Q9UMR5 302 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 TSSC4Q9Y5U2 329 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PROB1E7EW31 1015 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 H3BNC9 293 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 HAX1O00165 279 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PPIHO43447 177 aaKnown RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 SELENBP1Q13228 472 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 PRSS53Q2L4Q9 553 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 C6orf15Q6UXA7 325 aaPredicted RBP6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 RFESDQ8TAC1 157 aa6.68□□□□□ -1.34
LIMCH1-201ENST00000313860 FFAR1O14842 300 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 CEACAM3P40198 252 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 ALKQ9UM73 1620 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TRAV9-1A0A075B6T8 112 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 SMIM28A0A1B0GU29 152 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TRDV1A0A1B0GX56 115 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1W2PQF6 199 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 IGF2P01344 180 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 PLNP26678 52 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TM4SF1P30408 202 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 HOXA6P31267 233 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 MS4A13Q5J8X5 152 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 DEFB104AQ8WTQ1 72 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 UBL5Q9BZL1 73 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM30AQ9NV96 361 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 LOC107986453A0A1B0GWG9 222 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 METTL12A8MUP2 240 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 NDUFB4O95168 129 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 LINC00303Q3SY05 128 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TREML2Q5T2D2 321 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 PQLC2Q6ZP29 291 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 RAB40CQ96S21 281 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 MMP25Q9NPA2 562 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 SLIT1O75093 1534 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 NWD2Q9ULI1 1742 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 ALG1L2C9J202 215 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 GFYI3L273 518 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 INAFM2P0DMQ5 153 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 CD68P34810 354 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM50BP56557 158 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 YBEYP58557 167 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 UBE2DNLQ8IWF7 75 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 PTPMT1Q8WUK0 201 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TMEM45BQ96B21 275 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 SCRT1Q9BWW7 348 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 TINCRA0A1B0GVN0 87 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 A0A1B0GWJ7 208 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 ZAR1LA6NP61 321 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 LINC00587B1AMM8 73 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 CST3P01034 146 aaPredicted RBP6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 CDKN1AP38936 164 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM90A1Q86YD7 464 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 FAM19A2Q8N3H0 131 aa6.67□□□□□ -1.34
LIMCH1-201ENST00000313860 SNRPGP15A8MWD9 76 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 M0R381 172 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 CRLF1O75462 422 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 CEACAM4O75871 244 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 SLAQ13239 276 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 LCN8Q6JVE9 175 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 WNT2BQ93097 391 aa6.66□□□□□ -1.34
LIMCH1-201ENST00000313860 MYH2Q9UKX2 1941 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.6 ms