RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 PRAMEF5Q5TYX0 476 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 TEX261Q6UWH6 196 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 C1orf87Q8N0U7 546 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 TNFSF18Q9UNG2 199 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 U3KQ87 197 aa13.65□□□□□ -0.22
USP4-201ENST00000265560 TNCP24821 2201 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 NPIPB11E5RHQ5 1161 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 HTR2BP41595 481 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 FGL1Q08830 312 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 ZNF816Q0VGE8 651 aaPredicted RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 RPL39P5Q59GN2 51 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 ALKAL2Q6UX46 152 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 ZNF680Q8NEM1 530 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 C14orf79Q96F83 325 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 TMEM204Q9BSN7 226 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 UBR5O95071 2799 aaPredicted RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 MBPP02686 304 aaPredicted RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 LOXL3P58215 753 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 C1orf229Q6ZS94 237 aaPredicted RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 OR8H3Q8N146 312 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 OR5D13Q8NGL4 314 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 DVL1O14640 695 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 RGS13O14921 159 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 CDS2O95674 445 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 IGKV1-39P01597 117 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 IGKV1D-39P04432 117 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 RPL31P62899 125 aaKnown RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 MORN2Q502X0 79 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 CXorf66Q5JRM2 361 aaPredicted RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 RNASE11Q8TAA1 199 aaKnown RBP13.64□□□□□ -0.23
USP4-201ENST00000265560 AGMATQ9BSE5 352 aa13.64□□□□□ -0.23
USP4-201ENST00000265560 POM121CA8CG34 1229 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 CYCSP99999 105 aaKnown RBP13.63□□□□□ -0.23
USP4-201ENST00000265560 IL15RAQ13261 267 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 EXOSC2Q13868 293 aaKnown RBP13.63□□□□□ -0.23
USP4-201ENST00000265560 SDHAF2Q9NX18 166 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 TRGV10A0A0A0MS01 117 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 LINC00473A8K010 186 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 PROP1O75360 226 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 INO80EQ8NBZ0 244 aaPredicted RBP13.63□□□□□ -0.23
USP4-201ENST00000265560 OR6C3Q9NZP0 311 aa13.63□□□□□ -0.23
USP4-201ENST00000265560 NKX6-3A6NJ46 265 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 C17orf98A8MV24 154 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 RND3P61587 244 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 ZNF585BQ52M93 769 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 Q6ZRM9 215 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 FAM185AQ8N0U4 392 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 UCP1P25874 307 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 S100GP29377 79 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 ZNF645Q8N7E2 425 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 RBPMSQ93062 196 aaKnown RBP13.62□□□□□ -0.23
USP4-201ENST00000265560 SMIM3Q9BZL3 60 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 KBTBD11-OT1A0A1B0GTJ5 212 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 TEX46H3BTG2 121 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 KRASP01116 189 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 TCTEX1D2Q8WW35 142 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 TMEM56Q96MV1 263 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 ZC4H2Q9NQZ6 224 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 CLN8Q9UBY8 286 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 TMEM56-RWDD3S4R434 201 aa13.62□□□□□ -0.23
USP4-201ENST00000265560 H0Y980 276 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 PLXNB1O43157 2135 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 AKR1C2P52895 323 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 BRWD1-AS2P59051 145 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 POLR2GP62487 172 aaKnown RBP eCLIP13.61□□□□□ -0.23
USP4-201ENST00000265560 CGB3P0DN86 165 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 CGB7P0DN87 165 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 TMEM200BQ69YZ2 307 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 LRTM2Q8N967 370 aa13.61□□□□□ -0.23
USP4-201ENST00000265560 ZNF471Q9BX82 626 aaPredicted RBP13.61□□□□□ -0.23
USP4-201ENST00000265560 NDUFB3O43676 98 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 CLDN1O95832 211 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 SLC25A4P12235 298 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 GPR12P47775 334 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 CT45A1Q5HYN5 189 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 CT45A3Q8NHU0 189 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 BSCL2Q96G97 398 aaPredicted RBP13.6□□□□□ -0.23
USP4-201ENST00000265560 CBLN4Q9NTU7 201 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 LPAR6P43657 344 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 FAM74A1Q5RGS3 127 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 NCR3LG1Q68D85 454 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 PRSS54Q6PEW0 395 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 ACOT7LQ6ZUV0 252 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 GPR146Q96CH1 333 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 ZFHX3Q15911 3703 aa13.6□□□□□ -0.23
USP4-201ENST00000265560 K7EPK0 472 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 PPIHO43447 177 aaKnown RBP13.59□□□□□ -0.23
USP4-201ENST00000265560 RP2O75695 350 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 DANCRP0C864 163 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 G6PCP35575 357 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 HTD2P86397 168 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 TAGLNQ01995 201 aaKnown RBP13.59□□□□□ -0.23
USP4-201ENST00000265560 TMEM65Q6PI78 240 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 SPAG16Q8N0X2 631 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 FAM71E2Q8N5Q1 922 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 TMED3Q9Y3Q3 217 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 DOPEY2Q9Y3R5 2298 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 TENM4Q6N022 2769 aa13.59□□□□□ -0.23
USP4-201ENST00000265560 HELZ2Q9BYK8 2649 aaKnown RBP13.59□□□□□ -0.23
USP4-201ENST00000265560 F5H0A9 414 aaPredicted RBP13.59□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms