RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 RFESDQ8TAC1 157 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 FRZBQ92765 325 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 FAM234AQ9H0X4 552 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 CADP27708 2225 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 CLDN34H7C241 214 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 CD55P08174 381 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 IL2RGP31785 369 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 ERVS71-1P61550 626 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 BTNL3Q6UXE8 466 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 TPRX1Q8N7U7 411 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 KDF1Q8NAX2 398 aaPredicted RBP10.75□□□□□ -0.69
LIG1-201ENST00000263274 SDSLQ96GA7 329 aa10.75□□□□□ -0.69
LIG1-201ENST00000263274 DEFB108AA8MXU0 73 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 IGHV3-13P01766 116 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 IGHV3-7P01780 117 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 BCL2P10415 239 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 GLIPR1P48060 266 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 PCSK4Q6UW60 755 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 GCNT2Q8N0V5 402 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 RCC1LQ96I51 464 aaKnown RBP10.74□□□□□ -0.69
LIG1-201ENST00000263274 PACRGQ96M98 296 aaPredicted RBP10.74□□□□□ -0.69
LIG1-201ENST00000263274 LAMP3Q9UQV4 416 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 IGHV3-43A0A0B4J1X8 118 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 ZNF737O75373 536 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 CER1O95813 267 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 IGHV3-43DP0DP04 118 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 G6PCP35575 357 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 PMELP40967 661 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 RAB4BP61018 213 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 PLPPR1Q8TBJ4 325 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 NEU1Q99519 415 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 MRPL37Q9BZE1 423 aaKnown RBP10.74□□□□□ -0.69
LIG1-201ENST00000263274 RBKSQ9H477 322 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 OBP2BQ9NPH6 170 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 SIRT7Q9NRC8 400 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 ABI3Q9P2A4 366 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 CLN8Q9UBY8 286 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 NCKAP5O14513 1909 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 LOC102723971A0A1B0GUV8 181 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 A0A1W2PPQ1 181 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 SMPD2O60906 423 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 MT-CO3P00414 261 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 MDH2P40926 338 aaKnown RBP10.74□□□□□ -0.69
LIG1-201ENST00000263274 SLC38A11Q08AI6 406 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 OR4F5Q8NH21 305 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 OR4F4Q96R69 305 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 SMDT1Q9H4I9 107 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 FZR1Q9UM11 496 aa10.74□□□□□ -0.69
LIG1-201ENST00000263274 A0A1B0GU03 582 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 IFNA1P01562 189 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 HOXA6P31267 233 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 OR3A1P47881 315 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 ZFP36L1Q07352 338 aaKnown RBP10.73□□□□□ -0.69
LIG1-201ENST00000263274 SPSB4Q96A44 273 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 FAM173AQ9BQD7 235 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 C2orf88Q9BSF0 95 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 OR2J1Q9GZK6 312 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 A0A0U1RQK1 487 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 IGHEP01854 428 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 ARR3P36575 388 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 GFRA1P56159 465 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 ZNF324BQ6AW86 544 aaPredicted RBP10.73□□□□□ -0.69
LIG1-201ENST00000263274 SSX7Q7RTT5 188 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 ZNF709Q8N972 641 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 TMEM37Q8WXS4 190 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 NINJ1Q92982 152 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 CDH20Q9HBT6 801 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 RNF115Q9Y4L5 304 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 OR2H2O95918 312 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 GABRA2P47869 451 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 LINC00205P59089 165 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 NUTF2P61970 127 aaKnown RBP10.73□□□□□ -0.69
LIG1-201ENST00000263274 ARG2P78540 354 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 TRA2AQ13595 282 aaKnown RBP eCLIP10.73□□□□□ -0.693e-6■□□□□ 10
LIG1-201ENST00000263274 ALKBH6Q3KRA9 238 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 NCR3LG1Q68D85 454 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 ZNF826PQ6ZT77 177 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 MDP1Q86V88 176 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 TMEM251Q8N6I4 163 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 OR5P3Q8WZ94 311 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 TTTY12Q9BZ98 90 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 KCNIP1Q9NZI2 227 aa10.73□□□□□ -0.69
LIG1-201ENST00000263274 TPRP12270 2363 aaKnown RBP10.72□□□□□ -0.69
LIG1-201ENST00000263274 EREGO14944 169 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 UBE2G2P60604 165 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 RTP5Q14D33 572 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 SLC35E3Q7Z769 313 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 H1FOOQ8IZA3 346 aaPredicted RBP10.72□□□□□ -0.69
LIG1-201ENST00000263274 FGFRL1Q8N441 504 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 OR5B12Q96R08 314 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 OR2D2Q9H210 308 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 KIAA1324LA8MWY0 1029 aaPredicted RBP10.72□□□□□ -0.69
LIG1-201ENST00000263274 IGKV1-39P01597 117 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 IGKV1-5P01602 117 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 IGKV1D-39P04432 117 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 CELA3BP08861 270 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 EGR1P18146 543 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 WNT5AP41221 380 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 LHX2P50458 406 aa10.72□□□□□ -0.69
LIG1-201ENST00000263274 UBE2NP61088 152 aaKnown RBP10.72□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 92.6 ms