RNA–Protein interactions for RNA: ENST00000216877.10

PTPRA-201, Transcript of protein tyrosine phosphatase, receptor type A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRA, Length 3,725 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRA-201ENST00000216877 RAB30Q15771 203 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 WDR5BQ86VZ2 330 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 IFI44Q8TCB0 444 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 BORCS8Q96FH0 119 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 SMIM10Q96HG1 83 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 CEP250Q9BV73 2442 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 BMI1P35226 326 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 ARL16Q0P5N6 197 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 PLPPR5Q32ZL2 321 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 LIPHQ8WWY8 451 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 FGF14Q92915 247 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 CLCF1Q9UBD9 225 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 FBLN5Q9UBX5 448 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 C3orf79P0CE67 100 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 KIR2DS3Q14952 304 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 PRR31Q5SQ13 230 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 GNB4Q9HAV0 340 aa12.57□□□□□ -0.4
PTPRA-201ENST00000216877 PLXNA2O75051 1894 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 WDR87Q6ZQQ6 2873 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 LRP5LA4QPB2 252 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 ATP5G3P48201 142 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 FABP6P51161 128 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 FUT6P51993 359 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 LILRA6Q6PI73 481 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 C9orf40Q8IXQ3 194 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 FAM89BQ8N5H3 189 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 LRRC3BQ96PB8 259 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 OTOL1A6NHN0 477 aaPredicted RBP12.56□□□□□ -0.4
PTPRA-201ENST00000216877 TMEM250H0YL14 139 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 SYNGR4O95473 234 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 SLC38A11Q08AI6 406 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 GABRA6Q16445 453 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 MRPL54Q6P161 138 aaKnown RBP12.56□□□□□ -0.4
PTPRA-201ENST00000216877 WDR74Q6RFH5 385 aaPredicted RBP12.56□□□□□ -0.4
PTPRA-201ENST00000216877 MBD3L1Q8WWY6 194 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 OR1E3Q8WZA6 343 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 LRFN3Q9BTN0 628 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 ELOVL5Q9NYP7 299 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 KCNS2Q9ULS6 477 aa12.56□□□□□ -0.4
PTPRA-201ENST00000216877 A0A1W2PPV4 95 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 HSBP1O75506 76 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 RPL24P83731 157 aaKnown RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 C16orf47Q6ZP98 133 aaPredicted RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF818PQ6ZRF7 136 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 H1FNTQ75WM6 255 aaPredicted RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF114Q8NC26 417 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 ARHGEF17Q96PE2 2063 aaPredicted RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 FBLL1A6NHQ2 334 aaKnown RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 GPX1P07203 203 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 PRRX1P54821 245 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 ZXDAP98168 799 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 TRIM61Q5EBN2 209 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 OR8I2Q8N0Y5 310 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 SFRP2Q96HF1 295 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 MRGPRX1Q96LB2 322 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 M0R1X1 148 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 DXOO77932 396 aaKnown RBP12.55□□□□□ -0.4
PTPRA-201ENST00000216877 IGKV1D-33P01593 117 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 IGKV1-33P01594 117 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 PPOXP50336 477 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF841Q6ZN19 808 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 TM4SF19Q96DZ7 209 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 APOOQ9BUR5 198 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 PLEK2Q9NYT0 353 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 TP53TG3Q9ULZ0 132 aa12.55□□□□□ -0.4
PTPRA-201ENST00000216877 SNAI2O43623 268 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SYNGR2O43760 224 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 TOMM40O96008 361 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 NTSR1P30989 418 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 NHLH1Q02575 133 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF77Q15935 545 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 LRTM2Q8N967 370 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 TAF15Q92804 592 aaKnown RBP eCLIP12.54□□□□□ -0.4
PTPRA-201ENST00000216877 GPR146Q96CH1 333 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 LHFPL6Q9Y693 200 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SPTA1P02549 2419 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 YPEL1O60688 119 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 TYMSP04818 313 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 ID3Q02535 119 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 KRTCAP3Q53RY4 240 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SPINK9Q5DT21 86 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 ASB10Q8WXI3 467 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SIGLEC12Q96PQ1 595 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 YPEL2Q96QA6 119 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 CACNA1GO43497 2377 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 WDFY3Q8IZQ1 3526 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 FBLP22087 321 aaKnown RBP12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SRIP30626 198 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 UQCRFS1P47985 274 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 SMAGPQ0VAQ4 97 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 TNFRSF14Q92956 283 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 FAM131CQ96AQ9 280 aa12.54□□□□□ -0.4
PTPRA-201ENST00000216877 PRSS38A1L453 326 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 GAGE10A6NGK3 116 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 M0R296 226 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 ZNF17P17021 662 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 MNX1P50219 401 aaPredicted RBP12.53□□□□□ -0.4
PTPRA-201ENST00000216877 LHX2P50458 406 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 SERF2P84101 59 aa12.53□□□□□ -0.4
PTPRA-201ENST00000216877 SAMD13Q5VXD3 122 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 93.1 ms