RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 LINC00469Q8N7U9 141 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 GTF3AQ92664 365 aaKnown RBP8.99□□□□□ -0.97
USP28-201ENST00000003302 OR51I2Q9H344 312 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 UFSP2Q9NUQ7 469 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 CRYBG3Q68DQ2 2970 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 PROP1O75360 226 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 APLNRP35414 380 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 IDH3GP51553 393 aaPredicted RBP8.99□□□□□ -0.97
USP28-201ENST00000003302 ALKBH2Q6NS38 261 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 C1orf229Q6ZS94 237 aaPredicted RBP8.99□□□□□ -0.97
USP28-201ENST00000003302 FGFRL1Q8N441 504 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 SCCPDHQ8NBX0 429 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 RNASE11Q8TAA1 199 aaKnown RBP8.99□□□□□ -0.97
USP28-201ENST00000003302 SPRR3Q9UBC9 169 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 C17orf98A8MV24 154 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 ZG16O60844 167 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 MAS1LP35410 378 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 GLIPR1P48060 266 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 ZNF787Q6DD87 383 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 SLC25A24Q6NUK1 477 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 MKXQ8IYA7 352 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 CDX2Q99626 313 aaPredicted RBP8.99□□□□□ -0.97
USP28-201ENST00000003302 NIPSNAP3BQ9BS92 247 aa8.99□□□□□ -0.97
USP28-201ENST00000003302 TLN1Q9Y490 2541 aaKnown RBP8.98□□□□□ -0.97
USP28-201ENST00000003302 LINC00473A8K010 186 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 HSPA12AO43301 675 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 SYNGR2O43760 224 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 CRYAAP02489 173 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 CDX1P47902 265 aaPredicted RBP8.98□□□□□ -0.97
USP28-201ENST00000003302 GNB2P62879 340 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 CLN3Q13286 438 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 ZNF114Q8NC26 417 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 KCNE4Q8WWG9 221 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 FAM234AQ9H0X4 552 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 PSENENQ9NZ42 101 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 RBM7Q9Y580 266 aaKnown RBP8.98□□□□□ -0.97
USP28-201ENST00000003302 GJE1A6NN92 205 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 S1PR2O95136 353 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 HLA-DRB3P79483 266 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 WDR5BQ86VZ2 330 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 MSL2Q9HCI7 577 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 S100A9P06702 114 aaKnown RBP8.98□□□□□ -0.97
USP28-201ENST00000003302 ZNF610Q8N9Z0 462 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 GP6Q9HCN6 339 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 A0A1B0GU03 582 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 S100A8P05109 93 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 TUBG1P23258 451 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 RAB5CP51148 216 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 PRAMEF6Q5VXH4 476 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 TVP23CQ96ET8 276 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 MEGF10Q96KG7 1140 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 ABCA4P78363 2273 aa8.98□□□□□ -0.97
USP28-201ENST00000003302 IGKV3D-15A0A087WSY6 115 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 MLNRO43193 412 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 BCL2P10415 239 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 S100PP25815 95 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 RNPS1Q15287 305 aaKnown RBP8.97□□□□□ -0.97
USP28-201ENST00000003302 TRAPPC2LQ9UL33 140 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 LNP1A1A4G5 178 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 DEGS1O15121 323 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 SNRPCP09234 159 aaKnown RBP8.97□□□□□ -0.97
USP28-201ENST00000003302 MYOD1P15172 320 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 OR3A1P47881 315 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 DCAF12Q5T6F0 453 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 COMMD1Q8N668 190 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 LEAP2Q969E1 77 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 APH1AQ96BI3 265 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 FAM210BQ96KR6 192 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.97□□□□□ -0.97
USP28-201ENST00000003302 SERPINA7P05543 415 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 WT1P19544 449 aaPredicted RBP8.97□□□□□ -0.97
USP28-201ENST00000003302 PCBD1P61457 104 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 HMGN3Q15651 99 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 APOBEC3DQ96AK3 386 aaPredicted RBP8.97□□□□□ -0.97
USP28-201ENST00000003302 SPRY4Q9C004 299 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 ATRXP46100 2492 aa8.97□□□□□ -0.97
USP28-201ENST00000003302 NUPR1O60356 82 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 HSPB1P04792 205 aaKnown RBP8.96□□□□□ -0.97
USP28-201ENST00000003302 PSG7Q13046 419 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 ADIRFQ15847 76 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 MSMPQ1L6U9 139 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 C6orf15Q6UXA7 325 aaPredicted RBP8.96□□□□□ -0.97
USP28-201ENST00000003302 Q8N7P7 452 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 OR4X1Q8NH49 305 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 MRGPRDQ8TDS7 321 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 HIST1H2BLQ99880 126 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 OR2D2Q9H210 308 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 CELSR2Q9HCU4 2923 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 SELLP14151 372 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 Q6ZS49 121 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 SSX9Q7RTT3 188 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 Q8TCH9 128 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 C14orf144Q96I85 54 aa8.96□□□□□ -0.97
USP28-201ENST00000003302 A0A1B0GV90 55 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 A0A1B0GW64 132 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 ODAMA1E959 279 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 C12orf77C9JDV5 145 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 CLDN1O95832 211 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 HNF1AP20823 631 aa8.96□□□□□ -0.98
USP28-201ENST00000003302 FAM3BP58499 235 aaPredicted RBP8.96□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms