RNA–Protein interactions for RNA: ENST00000637686.1

CLN3-261, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 533 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-261ENST00000637686 SAA4P35542 130 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 ECI1P42126 302 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 UBA52P62987 128 aaKnown RBP8.03□□□□□ -1.12
CLN3-261ENST00000637686 CDK10Q15131 360 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 Q3ZCU0 254 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 LY6G6FQ5SQ64 297 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 BRICD5Q6PL45 260 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 Q6ZPA2 131 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 OVCH2Q7RTZ1 564 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 TMEM17Q86X19 198 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 GVQW1Q8N7I0 195 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP8.03□□□□□ -1.12
CLN3-261ENST00000637686 POC5Q8NA72 575 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 DUSP18Q8NEJ0 188 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 OR4C16Q8NGL9 310 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 OR5H2Q8NGV7 314 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 CHPT1Q8WUD6 406 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 HDHD3Q9BSH5 251 aaPredicted RBP8.03□□□□□ -1.12
CLN3-261ENST00000637686 ST6GALNAC5Q9BVH7 336 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 C11orf54Q9H0W9 315 aaPredicted RBP8.03□□□□□ -1.12
CLN3-261ENST00000637686 HEXA-AS1Q9H8Q6 139 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 TNFRSF19Q9NS68 423 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 NECAP2Q9NVZ3 263 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 KCNIP1Q9NZI2 227 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 SLC23A1Q9UHI7 598 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 KIF25Q9UIL4 384 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 SCP2D1Q9UJQ7 156 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 TRAPPC2LQ9UL33 140 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 FAM96BQ9Y3D0 163 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 ATRQ13535 2644 aa8.03□□□□□ -1.12
CLN3-261ENST00000637686 MEIKINA0A087WXM9 373 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 MEIS3P1A6NDR6 274 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 ZNF729A6NN14 1252 aaPredicted RBP8.02□□□□□ -1.13
CLN3-261ENST00000637686 HOXA3O43365 443 aaPredicted RBP8.02□□□□□ -1.13
CLN3-261ENST00000637686 MMP23AO75900 390 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 RBP4P02753 201 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 CD3DP04234 171 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 CGB3P0DN86 165 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 CGB7P0DN87 165 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 IGHV1-8P0DP01 117 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 HRH1P35367 487 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 OR3A3P47888 321 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 RAG2P55895 527 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 ARPC4P59998 168 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 HTD2P86397 168 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 OXA1LQ15070 435 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 SURF2Q15527 256 aaPredicted RBP8.02□□□□□ -1.13
CLN3-261ENST00000637686 RNASE12Q5GAN4 147 aaKnown RBP8.02□□□□□ -1.13
CLN3-261ENST00000637686 DHRS11Q6UWP2 260 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 OR52M1Q8NGK5 317 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 C17orf50Q8WW18 174 aa8.02□□□□□ -1.13
CLN3-261ENST00000637686 SLC25A21Q9BQT8 299 aaPredicted RBP8.02□□□□□ -1.13
CLN3-261ENST00000637686 TRBV6-7A0A0A0MS04 114 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 KBTBD11-OT1A0A1B0GTJ5 212 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 FAM240BA0A1B0GVZ2 78 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 C15orf65H3BRN8 121 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 CLDN34H7C241 214 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 F2RL2O00254 374 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ITGB1BP1O14713 200 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 SPINT2O43291 252 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 IFNA6P05013 189 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ARG1P05089 322 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 FCER2P06734 321 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 FBP1P09467 338 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ZNF735P0CB33 412 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 RCC1P18754 421 aaPredicted RBP8.01□□□□□ -1.13
CLN3-261ENST00000637686 OMGP23515 440 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 HLA-DMAP28067 261 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 BTCP35070 178 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 GLP1RP43220 463 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 RFX2P48378 723 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 RBMS2Q15434 407 aaKnown RBP8.01□□□□□ -1.13
CLN3-261ENST00000637686 C17orf58Q2M2W7 97 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 MIDNQ504T8 468 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 PLA1AQ53H76 456 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 PRAMEF5Q5TYX0 476 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ZNF660Q6AZW8 331 aaPredicted RBP8.01□□□□□ -1.13
CLN3-261ENST00000637686 OR52W1Q6IF63 320 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 LHFPL1Q86WI0 220 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 OR13A1Q8NGR1 328 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 OR13D1Q8NGV5 346 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ENKURQ8TC29 256 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 MRGPRDQ8TDS7 321 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 GIMAP1Q8WWP7 306 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 GALMQ96C23 342 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 AJUBAQ96IF1 538 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 SCGB3A2Q96PL1 93 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 DPAGT1Q9H3H5 408 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 GAL3ST2Q9H3Q3 398 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 TAF9BQ9HBM6 251 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 ZNF230Q9UIE0 474 aaPredicted RBP8.01□□□□□ -1.13
CLN3-261ENST00000637686 JPT1Q9UK76 154 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 SESN1Q9Y6P5 492 aa8.01□□□□□ -1.13
CLN3-261ENST00000637686 IGKV1D-8A0A087WSZ0 117 aa8□□□□□ -1.13
CLN3-261ENST00000637686 IGHV2-26A0A0B4J1V2 119 aa8□□□□□ -1.13
CLN3-261ENST00000637686 TRAV39A0A0B4J263 110 aa8□□□□□ -1.13
CLN3-261ENST00000637686 FAM172BPA6NC97 362 aa8□□□□□ -1.13
CLN3-261ENST00000637686 C12orf77C9JDV5 145 aa8□□□□□ -1.13
CLN3-261ENST00000637686 TUSC2O75896 110 aa8□□□□□ -1.13
CLN3-261ENST00000637686 NDUFB6O95139 128 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 128.5 ms