RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 CCDC59Q9P031 241 aaKnown RBP15.36■□□□□ 0.05
CLN3-260ENST00000637578 AK3Q9UIJ7 227 aa15.36■□□□□ 0.05
CLN3-260ENST00000637578 A0A075B6Q4 140 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 C12orf77C9JDV5 145 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 ZNF701M0R085 212 aaPredicted RBP15.35■□□□□ 0.05
CLN3-260ENST00000637578 MFNGO00587 321 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 SCGNO76038 276 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 FAM106CPP0CH98 169 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 SOX6P35712 828 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 GNG10P50151 68 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 RAB7AP51149 207 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 HDHD3Q9BSH5 251 aaPredicted RBP15.35■□□□□ 0.05
CLN3-260ENST00000637578 ABCG5Q9H222 651 aa15.35■□□□□ 0.05
CLN3-260ENST00000637578 TET2Q6N021 2002 aaPredicted RBP15.34■□□□□ 0.05
CLN3-260ENST00000637578 SDCBPO00560 298 aaPredicted RBP15.34■□□□□ 0.05
CLN3-260ENST00000637578 NAPSAO96009 420 aa15.34■□□□□ 0.05
CLN3-260ENST00000637578 CSF1P09603 554 aa15.34■□□□□ 0.05
CLN3-260ENST00000637578 OR8H3Q8N146 312 aa15.34■□□□□ 0.05
CLN3-260ENST00000637578 C11orf44Q8N8P7 122 aa15.34■□□□□ 0.05
CLN3-260ENST00000637578 MBNL3Q9NUK0 354 aaKnown RBP15.34■□□□□ 0.05
CLN3-260ENST00000637578 TRAPPC2LQ9UL33 140 aa15.34■□□□□ 0.05
CLN3-260ENST00000637578 A0A1W2PPE3 182 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 RCC1P18754 421 aaPredicted RBP15.33■□□□□ 0.05
CLN3-260ENST00000637578 VDAC2P45880 294 aaPredicted RBP15.33■□□□□ 0.05
CLN3-260ENST00000637578 ZNF816Q0VGE8 651 aaPredicted RBP15.33■□□□□ 0.05
CLN3-260ENST00000637578 TMEM30BQ3MIR4 351 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 CDNFQ49AH0 187 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 C6orf183Q5T699 404 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 FOXB2Q5VYV0 432 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 HIST2H2BDQ6DRA6 164 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 TRAT1Q6PIZ9 186 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 Q6ZPA2 131 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 DRAM1Q8N682 238 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 OR10X1Q8NGY0 326 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 UBALD1Q8TB05 177 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 ST6GALNAC6Q969X2 333 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 PHF21AQ96BD5 680 aa15.33■□□□□ 0.05
CLN3-260ENST00000637578 CHMP1AQ9HD42 196 aaPredicted RBP15.33■□□□□ 0.05
CLN3-260ENST00000637578 M0QZK8 103 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 HPGDSO60760 199 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 FBXO24O75426 580 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 EIF4EP06730 217 aaKnown RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 CD28P10747 220 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 TMEM95Q3KNT9 176 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 FAM53AQ6NSI3 398 aaPredicted RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 MZT2AQ6P582 158 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 ZNF554Q86TJ5 538 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 ZNF439Q8NDP4 499 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 OR56B4Q8NH76 319 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 CAPSLQ8WWF8 208 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 CMSS1Q9BQ75 279 aaKnown RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 DCUN1D5Q9BTE7 237 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 RAB9BQ9NP90 201 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 C12orf4Q9NQ89 552 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 NDUFA13Q9P0J0 144 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 ELF5Q9UKW6 265 aaPredicted RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 A0A0A6YYH2 397 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 A6NJ64 397 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 SERPINE3A8MV23 424 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 SPINT2O43291 252 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 WIPF1O43516 503 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 HBZP02008 142 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 SNRNP70P08621 437 aaKnown RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 EBI3Q14213 229 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 ABCA11PQ4W5N1 156 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 IZUMO1Q8IYV9 350 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 FAM110DQ8TAY7 271 aaPredicted RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 S100A16Q96FQ6 103 aaKnown RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 SLIRPQ9GZT3 109 aaKnown RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 RIMS4Q9H426 269 aaPredicted RBP15.32■□□□□ 0.04
CLN3-260ENST00000637578 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN3-260ENST00000637578 DIABLOQ9NR28 239 aa15.32■□□□□ 0.04
CLN3-260ENST00000637578 TRAV18A0A075B6X5 111 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 IGHV3-43A0A0B4J1X8 118 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 TMEM235A6NFC5 223 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 HSD17B6O14756 317 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 APOA1P02647 267 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 GAPDHP04406 335 aaKnown RBP15.31■□□□□ 0.04
CLN3-260ENST00000637578 CD3GP09693 182 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 IGHV3-43DP0DP04 118 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 ARL6IP1Q15041 203 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 ZNF260Q3ZCT1 412 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 STEAP3Q658P3 488 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 SLC25A48Q6ZT89 311 aaKnown RBP15.31■□□□□ 0.04
CLN3-260ENST00000637578 OR1L1Q8NH94 360 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 DGCR14Q96DF8 476 aaKnown RBP15.31■□□□□ 0.04
CLN3-260ENST00000637578 CMTM3Q96MX0 182 aa15.31■□□□□ 0.04
CLN3-260ENST00000637578 TRBV6-6A0A0A6YYG2 114 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 IGHV1-3A0A0C4DH29 117 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 ADARB2-AS1A8MUL3 147 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 KCNAB3O43448 404 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 PEX14O75381 377 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 GSTP1P09211 210 aaKnown RBP15.3■□□□□ 0.04
CLN3-260ENST00000637578 ELK1P19419 428 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 ZNF134P52741 427 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 ZNF137PP52743 207 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 ARSJQ5FYB0 599 aaPredicted RBP15.3■□□□□ 0.04
CLN3-260ENST00000637578 ZNF880Q6PDB4 577 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 NDUFA11Q86Y39 141 aa15.3■□□□□ 0.04
CLN3-260ENST00000637578 SETD6Q8TBK2 473 aa15.3■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms