RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 UBE2J1Q9Y385 318 aaPredicted RBP13.95□□□□□ -0.18
CLN3-252ENST00000636907 HSPB11Q9Y547 144 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 DSCAML1Q8TD84 2053 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 LRBAP50851 2863 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 ZNF462Q96JM2 2506 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 DVL1O14640 695 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 IGHV2-70P01814 119 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 LRRC10Q5BKY1 277 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 GGNBP1Q5YKI7 109 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 LGI3Q8N145 548 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 ZNF645Q8N7E2 425 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 PPP1R1CQ8WVI7 109 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 C5orf30Q96GV9 206 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 C18orf12Q96KH6 178 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 NMES1Q9C002 83 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 C19orf12Q9NSK7 152 aa13.95□□□□□ -0.18
CLN3-252ENST00000636907 hADV38S2A0JD32 116 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 ZNF729A6NN14 1252 aaPredicted RBP13.94□□□□□ -0.18
CLN3-252ENST00000636907 H0Y980 276 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 FSTL3O95633 263 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 F2RP25116 425 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 CDKN1AP38936 164 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 LGALSLQ3ZCW2 172 aaPredicted RBP13.94□□□□□ -0.18
CLN3-252ENST00000636907 LRRC37A5PQ49AS3 106 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 MORN2Q502X0 79 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 AVPI1Q5T686 147 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 LYZL2Q7Z4W2 148 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 C2orf50Q96LR7 162 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 TMEM56Q96MV1 263 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 RAB9BQ9NP90 201 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 COMMD9Q9P000 198 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 LINC00312Q9Y6C7 94 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 TMEM56-RWDD3S4R434 201 aa13.94□□□□□ -0.18
CLN3-252ENST00000636907 ST8SIA5O15466 376 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 YPEL1O60688 119 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 WNT2P09544 360 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 DAOP14920 347 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 UCP1P25874 307 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 RPL31P62899 125 aaKnown RBP13.93□□□□□ -0.18
CLN3-252ENST00000636907 SRPXP78539 464 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 MRPS11P82912 194 aaKnown RBP13.93□□□□□ -0.18
CLN3-252ENST00000636907 CYCSP99999 105 aaKnown RBP13.93□□□□□ -0.18
CLN3-252ENST00000636907 MEF2CQ06413 473 aaPredicted RBP13.93□□□□□ -0.18
CLN3-252ENST00000636907 FGL1Q08830 312 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 ZNF273Q14593 569 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 TMEM268Q5VZI3 342 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 OR51H1Q8NH63 302 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 YPEL2Q96QA6 119 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 LINC00574Q9H8X3 128 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 KLF2Q9Y5W3 355 aaPredicted RBP13.93□□□□□ -0.18
CLN3-252ENST00000636907 FLNCQ14315 2725 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 DOPEY1Q5JWR5 2465 aa13.93□□□□□ -0.18
CLN3-252ENST00000636907 FXYD6-FXYD2A0A087WZ82 144 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 IFNA21P01568 189 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 IFITM2Q01629 132 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 UTF1Q5T230 341 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 SELENOHQ8IZQ5 122 aaKnown RBP13.92□□□□□ -0.18
CLN3-252ENST00000636907 SLC35G3Q8N808 338 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 EDARADDQ8WWZ3 215 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 H1FXQ92522 213 aaKnown RBP13.92□□□□□ -0.18
CLN3-252ENST00000636907 ABHD14BQ96IU4 210 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 AGMATQ9BSE5 352 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 GFOD1Q9NXC2 390 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 IDI2-AS1Q9NZ38 188 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 PSG11Q9UQ72 335 aa13.92□□□□□ -0.18
CLN3-252ENST00000636907 HMSDA8MTL9 139 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 CDS2O95674 445 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 IGHV3-7P01780 117 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 SRSF1Q07955 248 aaKnown RBP eCLIP13.91□□□□□ -0.18
CLN3-252ENST00000636907 IAH1Q2TAA2 248 aaPredicted RBP13.91□□□□□ -0.18
CLN3-252ENST00000636907 TMEM200BQ69YZ2 307 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 ZNF695Q8IW36 515 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 ZBTB34Q8NCN2 500 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 TAS2R3Q9NYW6 316 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 USP9XQ93008 2570 aaPredicted RBP13.91□□□□□ -0.18
CLN3-252ENST00000636907 ARPC5O15511 151 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 MMP23AO75900 390 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 GOSR1O95249 250 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 MPC2O95563 127 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 CXCL2P19875 107 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 ZNF134P52741 427 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 IL15RAQ13261 267 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 EIF4EBP1Q13541 118 aaPredicted RBP13.91□□□□□ -0.18
CLN3-252ENST00000636907 MSMO1Q15800 293 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 PRAMEF5Q5TYX0 476 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 C11orf87Q6NUJ2 197 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 ZBTB8BQ8NAP8 495 aaPredicted RBP13.91□□□□□ -0.18
CLN3-252ENST00000636907 SPOCK3Q9BQ16 436 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 GSKIPQ9P0R6 139 aa13.91□□□□□ -0.18
CLN3-252ENST00000636907 PPIHO43447 177 aaKnown RBP13.9□□□□□ -0.18
CLN3-252ENST00000636907 B3GALNT1O75752 331 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 SLC25A4P12235 298 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 CCL3L1P16619 93 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 PSMB6P28072 239 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 SSTR2P30874 369 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 FAM219AQ8IW50 185 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 LEAP2Q969E1 77 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 SDHAF2Q9NX18 166 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 TMED3Q9Y3Q3 217 aa13.9□□□□□ -0.18
CLN3-252ENST00000636907 RNF212BA8MTL3 300 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms