RNA–Protein interactions for RNA: ENST00000636759.1

SCN1A-213, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 3,606 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-213ENST00000636759 HSD52Q0P140 79 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 RUNX3Q13761 415 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 BVES-AS1Q5T3Y7 98 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SP5Q6BEB4 398 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF695Q8IW36 515 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 CDRT4Q8N9R6 151 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR2Z1Q8NG97 314 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR2A1Q8NGT9 310 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ELSPBP1Q96BH3 223 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 KCNS1Q96KK3 526 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 GPX7Q96SL4 187 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ZFYVE21Q9BQ24 234 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 NXT1Q9UKK6 140 aaKnown RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 UBE2J1Q9Y385 318 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 CFAP54Q96N23 3096 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SCN2AQ99250 2005 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 TRPM6Q9BX84 2022 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SNURFLB1AK76 121 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 STAG3L2P0CL84 134 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 BCL6P41182 706 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 LTC4SQ16873 150 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 EMC4Q5J8M3 183 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 FAM57BQ71RH2 274 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 Q8N976 141 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF439Q8NDP4 499 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR2M3Q8NG83 312 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR4F17Q8NGA8 305 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 OR4N2Q8NGD1 307 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 FNDC4Q9H6D8 234 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-213ENST00000636759 SCN3AQ9NY46 2000 aa5.88□□□□□ -1.47
SCN1A-213ENST00000636759 PPIAL4EA0A075B759 164 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 PPIAL4CA0A0B4J2A2 164 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 C7orf71A4D174 169 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 PPIAL4DF5H284 164 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 LMX1BO60663 402 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF324O75467 553 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 PPIAL4FP0DN26 164 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF823P16415 610 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 GPR1P46091 355 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 NPBWR2P48146 333 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 GABRA6Q16445 453 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ABHD17CQ6PCB6 329 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SLC25A34Q6PIV7 304 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 OR4N5Q8IXE1 308 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 MRAP2Q96G30 205 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SCARF2Q96GP6 870 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 GMPPAQ96IJ6 420 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 S1PR5Q9H228 398 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 PLEKHJ1Q9NW61 149 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 RBM14-RBM4A0A0A0MSL8 147 aaKnown RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 K7EQS6 105 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 USF1P22415 310 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 IER3P46695 156 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 FUT6P51993 359 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM50BP56557 158 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 LINC00310P59036 64 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 HERV-K104P61576 105 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 QRFPP83859 136 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 TGFBR3Q03167 851 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 TMEM177Q53S58 311 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 LCN12Q6JVE5 192 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ZNF788Q6ZQV5 615 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ATG4DQ86TL0 474 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 LRTM2Q8N967 370 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SLC25A40Q8TBP6 338 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 DPF1Q92782 380 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ST6GALNAC6Q969X2 333 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 FBLN5Q9UBX5 448 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 CD207Q9UJ71 328 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 RNF114Q9Y508 228 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SELENOKQ9Y6D0 94 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ARL2-SNX15V9GYD0 113 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 A0A0G2JMM0 328 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 A0A1W2PPB8 328 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 KIR3DP1A8MWS1 328 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 C10orf142B7Z368 130 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 PLPP3O14495 311 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SLC16A7O60669 478 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 IGLL1P15814 213 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 OTX2P32243 289 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 ARL3P36405 182 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 WASP42768 502 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 KIR2DL1P43626 348 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-213ENST00000636759 SERF2P84101 59 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 C18orf12Q96KH6 178 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 GNB4Q9HAV0 340 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 TAAR3PQ9P1P4 343 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 COPS7AQ9UBW8 275 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 NAT8BQ9UHF3 227 aa5.87□□□□□ -1.47
SCN1A-213ENST00000636759 A0A0A6YYD4 124 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 F2Z2F3 143 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 HMGB3O15347 200 aaKnown RBP5.86□□□□□ -1.47
SCN1A-213ENST00000636759 NXPH3O95157 252 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 CA2P00918 260 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 APOA2P02652 100 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 SMIM10L1P0DMW3 83 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 TNFRSF4P43489 277 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 EMDP50402 254 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ROM1Q03395 351 aa5.86□□□□□ -1.47
SCN1A-213ENST00000636759 ACKR1Q16570 336 aa5.86□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms