RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 OR1L1Q8NH94 360 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 VCXQ9H320 206 aa10.87□□□□□ -0.67
CLN3-249ENST00000636685 PEF1Q9UBV8 284 aaKnown RBP10.87□□□□□ -0.67
CLN3-249ENST00000636685 LOC102724200A0A096LPH7 203 aaPredicted RBP10.86□□□□□ -0.67
CLN3-249ENST00000636685 H3BNX3 289 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 OR2A4O95047 310 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 MT-ND4P03905 459 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 ATF4P18848 351 aaPredicted RBP10.86□□□□□ -0.67
CLN3-249ENST00000636685 MS4A2Q01362 244 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 DEFB114Q30KQ6 69 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 ZNF691Q5VV52 312 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 PQLC1Q8N2U9 271 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 PRR18Q8N4B5 295 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 OR5T1Q8NG75 326 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 DYNLRB2Q8TF09 96 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 WDR89Q96FK6 387 aaPredicted RBP10.86□□□□□ -0.67
CLN3-249ENST00000636685 ZNF556Q9HAH1 456 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 H2AFY2Q9P0M6 372 aaPredicted RBP10.86□□□□□ -0.67
CLN3-249ENST00000636685 PEMTQ9UBM1 199 aa10.86□□□□□ -0.67
CLN3-249ENST00000636685 A0A0G2JLM5 398 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 XRCC3O43542 346 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 SPRY2O43597 315 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 SULT1C4O75897 302 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 OR7C1O76099 320 aaPredicted RBP10.85□□□□□ -0.67
CLN3-249ENST00000636685 EDN2P20800 178 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 PRKACGP22612 351 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 BMI1P35226 326 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 OR3A3P47888 321 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 ZNF45Q02386 682 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 TP53I3Q53FA7 332 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 OGFRL1Q5TC84 451 aaPredicted RBP10.85□□□□□ -0.67
CLN3-249ENST00000636685 AADACL4Q5VUY2 407 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 LPCAT4Q643R3 524 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 FAM131AQ6UXB0 335 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 SPATA24Q86W54 205 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 PXT1Q8NFP0 134 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 OR13C3Q8NGS6 347 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 OR2G2Q8NGZ5 317 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 PARP12Q9H0J9 701 aaKnown RBP10.85□□□□□ -0.67
CLN3-249ENST00000636685 GNG8Q9UK08 70 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 AP4S1Q9Y587 144 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 SELENOKQ9Y6D0 94 aa10.85□□□□□ -0.67
CLN3-249ENST00000636685 AQP12BA6NM10 295 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 AIPO00170 330 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 SPINT2O43291 252 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 HTR3BO95264 441 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 HBZP02008 142 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 HSPA13P48723 471 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 ADARB1P78563 741 aaKnown RBP10.84□□□□□ -0.67
CLN3-249ENST00000636685 GK3PQ14409 553 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 GNMTQ14749 295 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 DEFB135Q30KP9 77 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 STEAP3Q658P3 488 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 ZNF343Q6P1L6 599 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 IZUMO2Q6UXV1 221 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 ZNF497Q6ZNH5 498 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 DHFR2Q86XF0 187 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 AQP12AQ8IXF9 295 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 BVESQ8NE79 360 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 OR10H4Q8NGA5 316 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 TNFAIP8L1Q8WVP5 186 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 ABHD14AQ9BUJ0 271 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 Q9H521 79 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 FRRS1LQ9P0K9 344 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 TP53TG1Q9Y2A0 90 aa10.84□□□□□ -0.67
CLN3-249ENST00000636685 TCRBV3S1A0A5B6 114 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 PRSS29PA6NIE9 313 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 H3BUA1 57 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 AIREO43918 545 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 CA2P00918 260 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 CST1P01037 141 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 ISG15P05161 165 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 CRISP1P54107 249 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 NANOS3P60323 173 aaKnown RBP10.83□□□□□ -0.68
CLN3-249ENST00000636685 MED21Q13503 144 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 RSU1Q15404 277 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 MORN2Q502X0 79 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 FAM98BQ52LJ0 330 aaKnown RBP10.83□□□□□ -0.68
CLN3-249ENST00000636685 SYT6Q5T7P8 510 aaPredicted RBP10.83□□□□□ -0.68
CLN3-249ENST00000636685 NXNL2Q5VZ03 156 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 ZNF562Q6V9R5 426 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 ZNF833PQ6ZTB9 187 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 SLC16A13Q7RTY0 426 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 GRPEL2Q8TAA5 225 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 NEK7Q8TDX7 302 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 IFT22Q9H7X7 185 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 ZC4H2Q9NQZ6 224 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 ST3GAL6Q9Y274 331 aa10.83□□□□□ -0.68
CLN3-249ENST00000636685 LRP1BQ9NZR2 4599 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 A6NHS1 94 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 GABRPO00591 440 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 GEMIN2O14893 280 aaKnown RBP10.82□□□□□ -0.68
CLN3-249ENST00000636685 OR2T7P0C7T2 308 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 ALKBH1Q13686 389 aaKnown RBP10.82□□□□□ -0.68
CLN3-249ENST00000636685 TMEM30BQ3MIR4 351 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 ATAD3CQ5T2N8 411 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 FAM220AQ7Z4H9 259 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 C5orf24Q7Z6I8 188 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 ZNF575Q86XF7 245 aa10.82□□□□□ -0.68
CLN3-249ENST00000636685 TMEM217Q8N7C4 229 aa10.82□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms