RNA–Protein interactions for RNA: ENST00000628023.3

CLN3-239, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,183 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-239ENST00000628023 C8orf31Q8N9H6 132 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 DTX3Q8N9I9 347 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 OR2AK2Q8NG84 335 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 ABHD14AQ9BUJ0 271 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 CEPT1Q9Y6K0 416 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 MGAM2Q2M2H8 2515 aa14.6□□□□□ -0.07
CLN3-239ENST00000628023 SMIM31A0A1B0GVY4 71 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 FAM25AB3EWG3 89 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 FAM25CB3EWG5 89 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 FAM25GB3EWG6 89 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 SLC31A2O15432 143 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 YPEL1O60688 119 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 HPGDSO60760 199 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 APOA1P02647 267 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 CRYBA1P05813 215 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 ZBTB25P24278 435 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 LINC00311Q8N616 119 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 OR4A4PQ8NGN8 299 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 CMTM3Q96MX0 182 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 YPEL2Q96QA6 119 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 OCSTAMPQ9BR26 566 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 ST6GALNAC5Q9BVH7 336 aa14.59□□□□□ -0.07
CLN3-239ENST00000628023 CCDC59Q9P031 241 aaKnown RBP14.59□□□□□ -0.07
CLN3-239ENST00000628023 VGLL3A8MV65 326 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 OOSP1A8MZH6 123 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 HSD17B6O14756 317 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 BET1O15155 118 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 RGS5O15539 181 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 LPLP06858 475 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 BRS3P32247 399 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 RAB13P51153 203 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 SLC25A48Q6ZT89 311 aaKnown RBP14.58□□□□□ -0.08
CLN3-239ENST00000628023 LYG1Q8N1E2 194 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 ZNF439Q8NDP4 499 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 AUNIPQ9H7T9 357 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 OR1A1Q9P1Q5 309 aa14.58□□□□□ -0.08
CLN3-239ENST00000628023 RSL24D1Q9UHA3 163 aaKnown RBP14.58□□□□□ -0.08
CLN3-239ENST00000628023 FAM181BA6NEQ2 426 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 LY6LH3BQJ8 138 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 GPR137BO60478 399 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 GSTT2P0CG29 244 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 GSTT2BP0CG30 244 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 CEACAM6P40199 344 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 RAB7AP51149 207 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 TAS2R20P59543 309 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 SRSF7Q16629 238 aaKnown RBP eCLIP14.57□□□□□ -0.08
CLN3-239ENST00000628023 CT45A1Q5HYN5 189 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 DHRS7BQ6IAN0 325 aaPredicted RBP14.57□□□□□ -0.08
CLN3-239ENST00000628023 CT45A3Q8NHU0 189 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 DYNC2LI1Q8TCX1 351 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 GINS4Q9BRT9 223 aa14.57□□□□□ -0.08
CLN3-239ENST00000628023 MRPS7Q9Y2R9 242 aaKnown RBP14.57□□□□□ -0.08
CLN3-239ENST00000628023 SSX5O60225 188 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 GAPDHP04406 335 aaKnown RBP14.56□□□□□ -0.08
CLN3-239ENST00000628023 PTHLHP12272 177 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 ELK1P19419 428 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 REG1BP48304 166 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 ZNF134P52741 427 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 OR10J5Q8NHC4 309 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 EDARADDQ8WWZ3 215 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 RAB18Q9NP72 206 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 IFT46Q9NQC8 304 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 ADAM30Q9UKF2 790 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 PITPNC1Q9UKF7 332 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 TCF19Q9Y242 345 aa14.56□□□□□ -0.08
CLN3-239ENST00000628023 IGKV1-6A0A0C4DH72 117 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 ST8SIA5O15466 376 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 DYNLT3P51808 116 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 DIAPH2-AS1Q14236 149 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 HERPUD1Q15011 391 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 IGSF11Q5DX21 431 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 PRR31Q5SQ13 230 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 LY6G6FQ5SQ64 297 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 Q6ZS49 121 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 MOB3BQ86TA1 216 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 OR8H3Q8N146 312 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 CAPSLQ8WWF8 208 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 CABLES2Q9BTV7 478 aa14.55□□□□□ -0.08
CLN3-239ENST00000628023 C6orf62Q9GZU0 229 aaPredicted RBP14.55□□□□□ -0.08
CLN3-239ENST00000628023 RBM38Q9H0Z9 239 aaKnown RBP14.55□□□□□ -0.08
CLN3-239ENST00000628023 IGKV1D-8A0A087WSZ0 117 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 MEIS3P1A6NDR6 274 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 TIMM23O14925 209 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 TXNL1O43396 289 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 CBX5P45973 191 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 ARPC4P59998 168 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 RPL15P61313 204 aaKnown RBP14.54□□□□□ -0.08
CLN3-239ENST00000628023 ZNF816Q0VGE8 651 aaPredicted RBP14.54□□□□□ -0.08
CLN3-239ENST00000628023 LIAT1Q6ZQX7 453 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 TMEM219Q86XT9 240 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 TGIF2LXQ8IUE1 241 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 DRAM1Q8N682 238 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 OR56B4Q8NH76 319 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 PIFOQ8TCI5 191 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 DCUN1D5Q9BTE7 237 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 RDH8Q9NYR8 311 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 EXTL2Q9UBQ6 330 aa14.54□□□□□ -0.08
CLN3-239ENST00000628023 A0A1W2PPI3 338 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 DIRAS3O95661 229 aa14.53□□□□□ -0.08
CLN3-239ENST00000628023 FCER2P06734 321 aa14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.9 ms