RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 P2RY1P47900 373 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 GLIPR1P48060 266 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 FAM27E3Q08E93 113 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 RTP5Q14D33 572 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 Q6ZS92 163 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 CLRN3Q8NCR9 226 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 TMEM171Q8WVE6 324 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 BOD1Q96IK1 185 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 SMIM8Q96KF7 97 aa8.94□□□□□ -0.98
CUX1-221ENST00000622516 CHD8Q9HCK8 2581 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 IGHV3OR15-7A0A075B7D8 119 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 TRBV6-6A0A0A6YYG2 114 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 WRBO00258 174 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 IGKV1-39P01597 117 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 IGKV1D-39P04432 117 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 CD80P33681 288 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SSTR5P35346 364 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SULT1A2P50226 295 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 RND3P61587 244 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SWI5Q1ZZU3 235 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 FAM201AQ5SY85 155 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 IGF2-ASQ6U949 168 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 UBAC2Q8NBM4 344 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 GPR146Q96CH1 333 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 MMP26Q9NRE1 261 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SLC25A15Q9Y619 301 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SVEP1Q4LDE5 3571 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 C12orf77C9JDV5 145 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 H0Y980 276 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 PRH1P02810 166 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 VAMP2P63027 116 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 SRPXP78539 464 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 COL10A1Q03692 680 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 PJVKQ0ZLH3 352 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 EIF5AL1Q6IS14 154 aaKnown RBP8.93□□□□□ -0.98
CUX1-221ENST00000622516 BTNL3Q6UXE8 466 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 ACP7Q6ZNF0 438 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 ASCL5Q7RTU5 278 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 PUSL1Q8N0Z8 303 aaKnown RBP8.93□□□□□ -0.98
CUX1-221ENST00000622516 OR5C1Q8NGR4 320 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 RBMXL1Q96E39 390 aaKnown RBP8.93□□□□□ -0.98
CUX1-221ENST00000622516 COQ2Q96H96 371 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 CABLES2Q9BTV7 478 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 ABHD14AQ9BUJ0 271 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 CXXC4Q9H2H0 198 aa8.93□□□□□ -0.98
CUX1-221ENST00000622516 KIR2DP1A0A0G2JNF4 349 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 MBD3L4A6NDZ8 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 MBD3L3A6NE82 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 MBD3L5A6NJ08 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 SPRY3O43610 288 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 ATG12O94817 140 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 IGLV1-44P01699 117 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 HEXAP06865 529 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 EGR1P18146 543 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 PPP1CCP36873 323 aaKnown RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 EIF5AP63241 154 aaKnown RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 P2RY6Q15077 328 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 AKIRIN2Q53H80 203 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 TMEM182Q6ZP80 229 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 ODF3L1Q8IXM7 274 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 C1orf162Q8NEQ5 155 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 MBD3L2Q8NHZ7 208 aaPredicted RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 LRRC29Q8WV35 223 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 ABHD17AQ96GS6 310 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 UQCC1Q9NVA1 299 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 RAMP3O60896 148 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 GAPDHP04406 335 aaKnown RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 FABP1P07148 127 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 RNF224P0DH78 156 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 IAPPP10997 89 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 IL2RGP31785 369 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 EIF2S3P41091 472 aaKnown RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 RPP30P78346 268 aaKnown RBP8.92□□□□□ -0.98
CUX1-221ENST00000622516 RUNX1Q01196 453 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 GPR157Q5UAW9 335 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 IGFL3Q6UXB1 125 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 DRAM1Q8N682 238 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 TMEM252Q8N6L7 170 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 OR5D13Q8NGL4 314 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 CACNG5Q9UF02 275 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 NCOR2Q9Y618 2525 aa8.92□□□□□ -0.98
CUX1-221ENST00000622516 BORCS7-ASMTA0A0B4J1R7 106 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 TMEM210A6NLX4 147 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 HBZP02008 142 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 MDH2P40926 338 aaKnown RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 DYNLT3P51808 116 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 TMEM267Q0VDI3 215 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 FOXC1Q12948 553 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 HNF4GQ14541 408 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 MIDNQ504T8 468 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 KRBOX4Q5JUW0 171 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 CISD2Q8N5K1 135 aaKnown RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 CD177Q8N6Q3 437 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 LRFN3Q9BTN0 628 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 NKX6-2Q9C056 277 aaPredicted RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 OR2D2Q9H210 308 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 HES4Q9HCC6 221 aa8.91□□□□□ -0.98
CUX1-221ENST00000622516 MBNL3Q9NUK0 354 aaKnown RBP8.91□□□□□ -0.98
CUX1-221ENST00000622516 KCNIP1Q9NZI2 227 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 59.1 ms