RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 MSMO1Q15800 293 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 ARPC5LQ9BPX5 153 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 ZFP57Q9NU63 452 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 DCHS1Q96JQ0 3298 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 TRAV14DV4A0A0A6YYC5 116 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 ACTL6BO94805 426 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 TPT1P13693 172 aaKnown RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 COX7A1P24310 79 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 APOBEC3AP31941 199 aaPredicted RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 RPL23AP62750 156 aaKnown RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 SPANXN5Q5MJ07 72 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 MBNL2Q5VZF2 373 aaKnown RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 STX12Q86Y82 276 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 hADV38S2A0JD32 116 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 A1L4Q6 167 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 SNAPC5O75971 98 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 IGLV1-44P01699 117 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 UQCRFS1P47985 274 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 RCL1Q9Y2P8 373 aaKnown RBP13.23□□□□□ -0.29
CPSF1-213ENST00000620219 NSG2Q9Y328 171 aa13.23□□□□□ -0.29
CPSF1-213ENST00000620219 CSPG4Q6UVK1 2322 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 SCGB1C1Q8TD33 95 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 ABHD5Q8WTS1 349 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 RAB39BQ96DA2 213 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 CXorf58Q96LI9 332 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 CACNG5Q9UF02 275 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 IL19Q9UHD0 177 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 LGALS8O00214 317 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 REG1BP48304 166 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 KRTAP27-1Q3LI81 207 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 KCNJ3P48549 501 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 PLGLAQ15195 96 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 ADIPOQQ15848 244 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 GCSAMQ8N6F7 178 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 OR4A16Q8NH70 328 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 SNX22Q96L94 193 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 TP53RKQ96S44 253 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 S1PR3Q99500 378 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 ONECUT1Q9UBC0 465 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 TUBD1Q9UJT1 453 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 CCDC168Q8NDH2 2452 aa13.22□□□□□ -0.29
CPSF1-213ENST00000620219 IFNA5P01569 189 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 HMSDA8MTL9 139 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 G3V3Q6 166 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 LPAR2Q9HBW0 351 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 TREM1Q9NP99 234 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 NAT1P18440 290 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 NKX6-1P78426 367 aaPredicted RBP13.21□□□□□ -0.29
CPSF1-213ENST00000620219 DEFA5Q01523 94 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 OR2F1Q13607 317 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 ASCL4Q6XD76 172 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 HRH4Q9H3N8 390 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 GCM1Q9NP62 436 aa13.21□□□□□ -0.29
CPSF1-213ENST00000620219 IGHV1-69-2A0A0G2JMI3 117 aa13.21□□□□□ -0.3
CPSF1-213ENST00000620219 SCO1O75880 301 aa13.21□□□□□ -0.3
CPSF1-213ENST00000620219 OPN1MWP04001 364 aa13.21□□□□□ -0.3
CPSF1-213ENST00000620219 OPN1MW2P0DN77 364 aa13.21□□□□□ -0.3
CPSF1-213ENST00000620219 OPN1MW3P0DN78 364 aa13.21□□□□□ -0.3
CPSF1-213ENST00000620219 RBPMSQ93062 196 aaKnown RBP13.21□□□□□ -0.3
CPSF1-213ENST00000620219 MSGN1A6NI15 193 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 CRYM-AS1A6NIL9 109 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 SPRNQ5BIV9 151 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 SCARB1Q8WTV0 552 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 TMED3Q9Y3Q3 217 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 ZNF705EA8MWA4 302 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-213ENST00000620219 CCKARP32238 428 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 HEYLQ9NQ87 328 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-213ENST00000620219 TMEM106BQ9NUM4 274 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 IFNA10P01566 189 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 APOC3P02656 99 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 F2RP25116 425 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 DHODHQ02127 395 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 FAM53AQ6NSI3 398 aaPredicted RBP13.2□□□□□ -0.3
CPSF1-213ENST00000620219 LHFPL1Q86WI0 220 aa13.2□□□□□ -0.3
CPSF1-213ENST00000620219 PGLYRP1O75594 196 aaPredicted RBP13.19□□□□□ -0.3
CPSF1-213ENST00000620219 ZNF250P15622 560 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 CDKN1AP38936 164 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 UBA52P62987 128 aaKnown RBP13.19□□□□□ -0.3
CPSF1-213ENST00000620219 MSMPQ1L6U9 139 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 ADGRG4Q8IZF6 3080 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 FAM24AA6NFZ4 105 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 GUSBP1Q15486 140 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 FAM90A1Q86YD7 464 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 TNFSF18Q9UNG2 199 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 B9A039 149 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 BCL2L11O43521 198 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 MPZP25189 248 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 G6PCP35575 357 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 TGIF2LYQ8IUE0 185 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 CD177Q8N6Q3 437 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 CALYQ9NYX4 217 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 IFNA4P05014 189 aa13.19□□□□□ -0.3
CPSF1-213ENST00000620219 MRPS11P82912 194 aaKnown RBP13.19□□□□□ -0.3
CPSF1-213ENST00000620219 SRRM5B3KS81 715 aa13.18□□□□□ -0.3
CPSF1-213ENST00000620219 NUPL2O15504 423 aaKnown RBP13.18□□□□□ -0.3
CPSF1-213ENST00000620219 CAMLGP49069 296 aa13.18□□□□□ -0.3
CPSF1-213ENST00000620219 Q6P435 159 aa13.18□□□□□ -0.3
CPSF1-213ENST00000620219 SSX8Q7RTT4 187 aa13.18□□□□□ -0.3
CPSF1-213ENST00000620219 OR52M1Q8NGK5 317 aa13.18□□□□□ -0.3
CPSF1-213ENST00000620219 ANGPTL6Q8NI99 470 aa13.18□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 87.8 ms