RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 RSPO4Q2I0M5 234 aaPredicted RBP9.26□□□□□ -0.93
UPF3A-212ENST00000619079 ALKBH2Q6NS38 261 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 TMEM144Q7Z5S9 345 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 GAPTQ8N292 157 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 IFI44Q8TCB0 444 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 EXTL1Q92935 676 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 NAT6Q93015 286 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 BORCS8Q96FH0 119 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF442Q9H7R0 627 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 ST3GAL6Q9Y274 331 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 PIEZO1Q92508 2521 aa9.26□□□□□ -0.93
UPF3A-212ENST00000619079 OR6C6A6NF89 314 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 H3BP45 60 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 M0R135 149 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 OPN1LWP04000 364 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 RPS18P62269 152 aaKnown RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 RIPPLY2Q5TAB7 128 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 FAM78BQ5VT40 261 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF818PQ6ZRF7 136 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 OR4F5Q8NH21 305 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 NEIL1Q96FI4 390 aaPredicted RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF799Q96GE5 643 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 OXGR1Q96P68 337 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 OR4F4Q96R69 305 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 WDR61Q9GZS3 305 aaKnown RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 RYDENQ9NUL5 291 aaKnown RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 SOHLH2Q9NX45 425 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 FOXJ2Q9P0K8 574 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 PAM16Q9Y3D7 125 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 CTXND1A0A1B0GTU2 59 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 SLC33A1O00400 549 aaPredicted RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 GCH1P30793 250 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 FASLGP48023 281 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 SOX8P57073 446 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 FBXW4P57775 412 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 NSDHLQ15738 373 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 PIGYQ3MUY2 71 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 FAM180AQ6UWF9 173 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 C20orf196Q8IYI0 205 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 CIB3Q96Q77 187 aaPredicted RBP9.25□□□□□ -0.93
UPF3A-212ENST00000619079 WIPI2Q9Y4P8 454 aa9.25□□□□□ -0.93
UPF3A-212ENST00000619079 TRAV39A0A0B4J263 110 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 TRBV11-1A0A0K0K1C0 115 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 K7EP13 123 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 HS3ST1O14792 307 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 NXPH3O95157 252 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 CTXN2P0C2S0 81 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 PTTG1IPP53801 180 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 YPEL3P61236 119 aaPredicted RBP9.24□□□□□ -0.93
UPF3A-212ENST00000619079 RPP30P78346 268 aaKnown RBP9.24□□□□□ -0.93
UPF3A-212ENST00000619079 CDCP2Q5VXM1 449 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 Q6ZWC4 215 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 PRSS58Q8IYP2 241 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 CHODLQ9H9P2 273 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF581Q9P0T4 197 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 CEP250Q9BV73 2442 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 LY6G6EA0A0G2JKS1 128 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 SPAARA0A1B0GVQ0 90 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 MLNRO43193 412 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 SYNGR2O43760 224 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 MMP23AO75900 390 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 CAPZBP47756 277 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 RBM11P57052 281 aaKnown RBP9.24□□□□□ -0.93
UPF3A-212ENST00000619079 OR1D5P58170 312 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 PRSS8Q16651 343 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 SLC25A53Q5H9E4 307 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 BRICD5Q6PL45 260 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 PIP4P1Q86T03 277 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 OR5AU1Q8NGC0 362 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 OR2D3Q8NGH3 330 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 TAF15Q92804 592 aaKnown RBP eCLIP9.24□□□□□ -0.93
UPF3A-212ENST00000619079 PSENENQ9NZ42 101 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 U3KQA8 63 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 DCHS1Q96JQ0 3298 aa9.24□□□□□ -0.93
UPF3A-212ENST00000619079 SHANK1Q9Y566 2161 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 KIR2DS1A0A191URI9 304 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 LOC102725191A0A1B0GVB3 256 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 NKX6-3A6NJ46 265 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 IFNL4K9M1U5 179 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 SERPINE2P07093 398 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 KIR2DS4P43632 304 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 KIR2DS1Q14954 304 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 TESK1Q15569 626 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 PNPLA5Q7Z6Z6 429 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 C17orf82Q86X59 251 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 ZNF295-AS1Q8N0V1 137 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 RPP25LQ8N5L8 163 aaKnown RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 HSPB9Q9BQS6 159 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 GSX1Q9H4S2 264 aaPredicted RBP9.23□□□□□ -0.93
UPF3A-212ENST00000619079 SLC45A2Q9UMX9 530 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 TRAV9-1A0A075B6T8 112 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 LRP5LA4QPB2 252 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A10PA6NDY2 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A18PA6NE21 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A16PA6NEW6 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A20PA6NIJ5 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A8PA6NJQ4 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 SLC22A20A6NK97 555 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A7PA6NKC0 464 aa9.23□□□□□ -0.93
UPF3A-212ENST00000619079 FAM90A22PA8MWA6 464 aa9.23□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 50.3 ms