RNA–Protein interactions for RNA: ENST00000618327.4

CIITA-213, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CIITA, Length 4,657 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-213ENST00000618327 BTNL3Q6UXE8 466 aa11.93□□□□□ -0.5
CIITA-213ENST00000618327 ELF5Q9UKW6 265 aaPredicted RBP11.93□□□□□ -0.5
CIITA-213ENST00000618327 MUC6Q6W4X9 2439 aa11.93□□□□□ -0.5
CIITA-213ENST00000618327 SRSF6Q13247 344 aaKnown RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 VMA21Q3ZAQ7 101 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 COL6A6A6NMZ7 2263 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 IGKV3D-15A0A087WSY6 115 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 A0A087WV48 116 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 HMSDA8MTL9 139 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 SS18L1O75177 396 aaPredicted RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 PMCHP20382 165 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 COX7A1P24310 79 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 NPBWR2P48146 333 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 STUMQ69YW2 141 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 PRR27Q6MZM9 219 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 PRSS54Q6PEW0 395 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 ASCL5Q7RTU5 278 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 MS4A10Q96PG2 267 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 CISD1Q9NZ45 108 aaKnown RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 FOXD3Q9UJU5 478 aaPredicted RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 ZDHHC8Q9ULC8 765 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 BDP1A6H8Y1 2624 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 CRYM-AS1A6NIL9 109 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 TPRX1Q8N7U7 411 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 MDS2Q8NDY4 140 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 OR8B3Q8NGG8 313 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 OR8B2Q96RD0 313 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 NUDT16L1Q9BRJ7 211 aaKnown RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 TRAF4Q9BUZ4 470 aaPredicted RBP11.92□□□□□ -0.5
CIITA-213ENST00000618327 TRAPPC1Q9Y5R8 145 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 CCKARP32238 428 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 PRRX1P54821 245 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 FAM210BQ96KR6 192 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 POM121L2Q96KW2 1035 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 RAB40CQ96S21 281 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 OPN4Q9UHM6 478 aa11.92□□□□□ -0.5
CIITA-213ENST00000618327 AP4M1O00189 453 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 MGST3O14880 152 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 SMPD2O60906 423 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 VDAC1P21796 283 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 GLRX5Q86SX6 157 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 OR5P3Q8WZ94 311 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 ERVFC1-1P60608 527 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 HIST1H3AP68431 136 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 NR2C2APQ86WQ0 139 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 C11orf42Q8N5U0 333 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 ADTRPQ96IZ2 230 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 REPIN1Q9BWE0 567 aaKnown RBP11.91□□□□□ -0.5
CIITA-213ENST00000618327 ROS1P08922 2347 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 ATXN7O15265 892 aaPredicted RBP11.91□□□□□ -0.5
CIITA-213ENST00000618327 YIF1AO95070 293 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 KIR2DS2P43631 304 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 C1QL2Q7Z5L3 287 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 OR10S1Q8NGN2 331 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 DLL3Q9NYJ7 618 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 LRRK1Q38SD2 2015 aa11.91□□□□□ -0.5
CIITA-213ENST00000618327 UNC119Q13432 240 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 LINC00052Q96N35 136 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 GLRXP35754 106 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 ETFRF1Q6IPR1 90 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 SEZ6L2Q6UXD5 910 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 CCL13Q99616 98 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 SDHCQ99643 169 aaPredicted RBP11.9□□□□□ -0.5
CIITA-213ENST00000618327 SERTM2A0A1B0GWG4 89 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 VSIG10L2P0DP72 767 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 IGFBP3P17936 291 aaPredicted RBP11.9□□□□□ -0.5
CIITA-213ENST00000618327 NTNG2Q96CW9 530 aa11.9□□□□□ -0.5
CIITA-213ENST00000618327 SLC25A10Q9UBX3 287 aaPredicted RBP11.9□□□□□ -0.5
CIITA-213ENST00000618327 LEUTXA8MZ59 168 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 TDGF1P13385 188 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 RPL31P62899 125 aaKnown RBP11.9□□□□□ -0.51
CIITA-213ENST00000618327 C1QTNF12Q5T7M4 302 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 C19orf35Q6ZS72 473 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 TCTEX1D1Q8N7M0 179 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 OR4S2Q8NH73 311 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 MRPL24Q96A35 216 aaKnown RBP11.9□□□□□ -0.51
CIITA-213ENST00000618327 GHITMQ9H3K2 345 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 RNF115Q9Y4L5 304 aa11.9□□□□□ -0.51
CIITA-213ENST00000618327 TRAV34A0A0B4J273 112 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 TMEM218A2RU14 115 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 XKRY2A2RUG3 117 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 SCTP09683 121 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 TMEM183BQ1AE95 376 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 OR2C3Q8N628 320 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 UQCC1Q9NVA1 299 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 PLXND1Q9Y4D7 1925 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 A0A087X0M5 115 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 A0A1B0GX30 115 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 NAT2P11245 290 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 PPP1CCP36873 323 aaKnown RBP11.89□□□□□ -0.51
CIITA-213ENST00000618327 B3GALT5-AS1P59052 145 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 ERVS71-1P61550 626 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 GYPAP02724 150 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 IL24Q13007 206 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 PMS2P11Q13670 270 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 TMEM241Q24JQ0 296 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 ZBTB34Q8NCN2 500 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 NOL4LQ96MY1 436 aaPredicted RBP11.89□□□□□ -0.51
CIITA-213ENST00000618327 CLN8Q9UBY8 286 aa11.89□□□□□ -0.51
CIITA-213ENST00000618327 NAT8BQ9UHF3 227 aa11.89□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms