RNA–Protein interactions for RNA: ENST00000616974.1

LINC00540-202, long intergenic non-protein coding RNA 540, humanhuman

TSL 1 (best)

Gene LINC00540, Length 2,143 nt, Biotype lincRNA.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-202ENST00000616974 TOMM40LQ969M1 308 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 AGMATQ9BSE5 352 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 ST6GALNAC5Q9BVH7 336 aa10.8□□□□□ -0.68
LINC00540-202ENST00000616974 TMEM89A2RUT3 159 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 A6NDX4 124 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 CEACAM6P40199 344 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 OR10A7Q8NGE5 316 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 RPEQ96AT9 228 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 RITA1Q96K30 269 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ABHD14AQ9BUJ0 271 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 RBM38Q9H0Z9 239 aaKnown RBP10.79□□□□□ -0.68
LINC00540-202ENST00000616974 DPAGT1Q9H3H5 408 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ABRACLQ9P1F3 81 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ETV7Q9Y603 341 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 FBN3Q75N90 2809 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 SAA2-SAA4A0A096LPE2 208 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 IGHV1-3A0A0C4DH29 117 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 CTDSP2O14595 271 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 AMY1AP04745 511 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 AMY2AP04746 511 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 SNRNP70P08621 437 aaKnown RBP10.79□□□□□ -0.68
LINC00540-202ENST00000616974 SAA2P0DJI9 122 aaPredicted RBP10.79□□□□□ -0.68
LINC00540-202ENST00000616974 HTD2P86397 168 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 TMEM86BQ8N661 226 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 DRAXINQ8NBI3 349 aaPredicted RBP10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ZFAND2BQ8WV99 257 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 RTN4IP1Q8WWV3 396 aaPredicted RBP10.79□□□□□ -0.68
LINC00540-202ENST00000616974 OCSTAMPQ9BR26 566 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ZNF251Q9BRH9 671 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 ABCG5Q9H222 651 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 MIXL1Q9H2W2 232 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 AUNIPQ9H7T9 357 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 JPT1Q9UK76 154 aa10.79□□□□□ -0.68
LINC00540-202ENST00000616974 SERPINE3A8MV23 424 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 TRDCB7Z8K6 153 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 FABP7O15540 132 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 UBE2NLQ5JXB2 153 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 GLDNQ6ZMI3 551 aaPredicted RBP10.78□□□□□ -0.68
LINC00540-202ENST00000616974 LINC00311Q8N616 119 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 LINC01006Q8NI28 216 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 DYNC2LI1Q8TCX1 351 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 C11orf54Q9H0W9 315 aaPredicted RBP10.78□□□□□ -0.68
LINC00540-202ENST00000616974 EXOSC5Q9NQT4 235 aaKnown RBP eCLIP10.78□□□□□ -0.68
LINC00540-202ENST00000616974 YPEL1O60688 119 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 RAG2P55895 527 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 TAS2R20P59543 309 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 SNAPC3Q92966 411 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 YPEL2Q96QA6 119 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 MRPL20Q9BYC9 149 aaKnown RBP10.78□□□□□ -0.68
LINC00540-202ENST00000616974 RDH8Q9NYR8 311 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 SCOCQ9UIL1 159 aa10.78□□□□□ -0.68
LINC00540-202ENST00000616974 IGKV1D-33P01593 117 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 IGKV1-33P01594 117 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 HLA-DQB1P01920 261 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 RORCP51449 518 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 RNASE12Q5GAN4 147 aaKnown RBP10.77□□□□□ -0.69
LINC00540-202ENST00000616974 DHRS7BQ6IAN0 325 aaPredicted RBP10.77□□□□□ -0.69
LINC00540-202ENST00000616974 TRAT1Q6PIZ9 186 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 MOB1BQ7L9L4 216 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 MOB3BQ86TA1 216 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 LAX1Q8IWV1 398 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 OR2AK2Q8NG84 335 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 OR5R1Q8NH85 324 aa10.77□□□□□ -0.69
LINC00540-202ENST00000616974 RIMS4Q9H426 269 aaPredicted RBP10.77□□□□□ -0.69
LINC00540-202ENST00000616974 MRPS7Q9Y2R9 242 aaKnown RBP10.77□□□□□ -0.69
LINC00540-202ENST00000616974 H3BUI4 141 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 HSPA12AO43301 675 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF182P17025 639 aaPredicted RBP10.76□□□□□ -0.69
LINC00540-202ENST00000616974 NFYAP23511 347 aaPredicted RBP10.76□□□□□ -0.69
LINC00540-202ENST00000616974 CNTFRP26992 372 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 GNG2P59768 71 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 FOXB2Q5VYV0 432 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF554Q86TJ5 538 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 RAB2BQ8WUD1 216 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 CAPSLQ8WWF8 208 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 GPHA2Q96T91 129 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 ABCB10Q9NRK6 738 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 BTBD17A6NE02 478 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 FAM90A9PA6NNJ1 464 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 HAX1O00165 279 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 XRCC3O43542 346 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 SCAND1P57086 179 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 MRPS15P82914 257 aaKnown RBP10.76□□□□□ -0.69
LINC00540-202ENST00000616974 AANATQ16613 207 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 SNX29P2Q8IUI4 249 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 DCUN1D5Q9BTE7 237 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 CABLES2Q9BTV7 478 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF702PQ9H963 129 aa10.76□□□□□ -0.69
LINC00540-202ENST00000616974 MEGF8Q7Z7M0 2845 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 TRBV6-7A0A0A0MS04 114 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 IGKV1D-13A0A0B4J2D9 117 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 GSTP1P09211 210 aaKnown RBP10.75□□□□□ -0.69
LINC00540-202ENST00000616974 IGKV1-13P0DP09 117 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 TALDO1P37837 337 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 DYNLT3P51808 116 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF137PP52743 207 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 TMBIM6P55061 237 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 F2RL1P55085 397 aa10.75□□□□□ -0.69
LINC00540-202ENST00000616974 ZNF816Q0VGE8 651 aaPredicted RBP10.75□□□□□ -0.69
LINC00540-202ENST00000616974 HES1Q14469 280 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms