RNA–Protein interactions for RNA: ENST00000614496.4

MSH6-213, Transcript of mutS homolog 6, humanhuman

TSL 1 (best) BASIC

Gene MSH6, Length 4,150 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-213ENST00000614496 OR5B21A6NL26 309 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 YKT6O15498 198 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 RPL19P84098 196 aaKnown RBP10.73□□□□□ -0.69
MSH6-213ENST00000614496 HTD2P86397 168 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 SLC35E3Q7Z769 313 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 HS3ST6Q96QI5 342 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 TMEM204Q9BSN7 226 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 RNF122Q9H9V4 155 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.73□□□□□ -0.69
MSH6-213ENST00000614496 SPINT2O43291 252 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 FOLR2P14207 255 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 UCP1P25874 307 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 MPC1Q9Y5U8 109 aa10.73□□□□□ -0.69
MSH6-213ENST00000614496 PTPRSQ13332 1948 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 EGR1P18146 543 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 HEPN1Q6WQI6 88 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 MUCL1Q96DR8 90 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 OR2J1Q9GZK6 312 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 TGOLN2O43493 480 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 CYB5R3P00387 301 aaPredicted RBP10.72□□□□□ -0.69
MSH6-213ENST00000614496 HOXA5P20719 270 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 KITLGP21583 273 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 GPR12P47775 334 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 AESQ08117 197 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 SSPNQ14714 243 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 ACOT6Q3I5F7 207 aaPredicted RBP10.72□□□□□ -0.69
MSH6-213ENST00000614496 ZNF506Q5JVG8 444 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 RIPPLY2Q5TAB7 128 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 OR2M7Q8NG81 312 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 TMEM18Q96B42 140 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 HIPK2Q9H2X6 1198 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 VSIRQ9H7M9 311 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 TIMM8BQ9Y5J9 83 aaPredicted RBP10.72□□□□□ -0.69
MSH6-213ENST00000614496 B4DEV8 164 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 DVL1O14640 695 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 ERVFRD-1P60508 538 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 RAB31Q13636 194 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 BAGE3Q86Y29 109 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 BAGE2Q86Y30 109 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 CLDND2Q8NHS1 167 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 RCC1LQ96I51 464 aaKnown RBP10.72□□□□□ -0.69
MSH6-213ENST00000614496 PCGF1Q9BSM1 259 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 ZDHHC8Q9ULC8 765 aa10.72□□□□□ -0.69
MSH6-213ENST00000614496 CDH23Q9H251 3354 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 ELOA3CA0A087WX78 387 aaPredicted RBP10.71□□□□□ -0.69
MSH6-213ENST00000614496 TMEM30CPA0ZSE6 113 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 SPINK4O60575 86 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 FCGR3BO75015 233 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 TMPRSS7Q7RTY8 843 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 MDP1Q86V88 176 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 FREM1Q5H8C1 2179 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 LOC102723971A0A1B0GUV8 181 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 DUXBA0A1W2PPF3 345 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 J3QT63 122 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 OTX1P32242 354 aaPredicted RBP10.71□□□□□ -0.69
MSH6-213ENST00000614496 MEOX1P50221 254 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 PPP1CBP62140 327 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 TRA2AQ13595 282 aaKnown RBP eCLIP10.71□□□□□ -0.696e-7■■■■■ 32.2
MSH6-213ENST00000614496 ELOBQ15370 118 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 ZNF826PQ6ZT77 177 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 FGFRL1Q8N441 504 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 LRTM2Q8N967 370 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 DEFB108BQ8NET1 73 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 OR2T10Q8NGZ9 312 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 TRIB1Q96RU8 372 aa10.71□□□□□ -0.69
MSH6-213ENST00000614496 ZNF716A6NP11 495 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 A8MXE2 369 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BKO60814 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 MBP02144 154 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BJP06899 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BOP23527 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 G0S2P27469 103 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BBP33778 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 FAM3BP58499 235 aaPredicted RBP10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BDP58876 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BCP62807 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 ZNF90Q03938 601 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 RTP5Q14D33 572 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST2H2BEQ16778 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.71□□□□□ -0.7
MSH6-213ENST00000614496 OR52L2PQ8NGH6 319 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 DTD1Q8TEA8 209 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BHQ93079 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 TAAR9Q96RI9 348 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BNQ99877 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 HIST1H2BMQ99879 126 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 PRDM14Q9GZV8 571 aa10.71□□□□□ -0.7
MSH6-213ENST00000614496 KLF7O75840 302 aaPredicted RBP10.7□□□□□ -0.7
MSH6-213ENST00000614496 OR2H2O95918 312 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 CDC34P49427 236 aaPredicted RBP10.7□□□□□ -0.7
MSH6-213ENST00000614496 CCL11P51671 97 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 RPP30P78346 268 aaKnown RBP10.7□□□□□ -0.7
MSH6-213ENST00000614496 TAF15Q92804 592 aaKnown RBP eCLIP10.7□□□□□ -0.7
MSH6-213ENST00000614496 TMEM56Q96MV1 263 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 DEPPQ9NTK1 212 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 DMRT1Q9Y5R6 373 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 TMEM56-RWDD3S4R434 201 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 F6UZH7 168 aa10.7□□□□□ -0.7
MSH6-213ENST00000614496 MEF2BQ02080 365 aaPredicted RBP10.7□□□□□ -0.7
MSH6-213ENST00000614496 PPP1R32Q7Z5V6 425 aa10.7□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 86.4 ms