RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MAFIPQ8WZ33 124 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 AP3S1Q92572 193 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 RPEQ96AT9 228 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 CMTM3Q96MX0 182 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 YPEL2Q96QA6 119 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 A3GALT2U3KPV4 340 aa13.34□□□□□ -0.27
CCDC28A-202ENST00000611852 IGKV1-6A0A0C4DH72 117 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 FAM181BA6NEQ2 426 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 FABP7O15540 132 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 SSX5O60225 188 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 GPR137BO60478 399 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 RGS11O94810 467 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 KIR2DS4P43632 304 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 DIAPH2-AS1Q14236 149 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 KIR2DS1Q14954 304 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 HERPUD1Q15011 391 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 Q6ZS49 121 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 OR4A4PQ8NGN8 299 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 TOMM40LQ969M1 308 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 MMP27Q9H306 513 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 AUNIPQ9H7T9 357 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 ABCB10Q9NRK6 738 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 SLC23A1Q9UHI7 598 aa13.33□□□□□ -0.28
CCDC28A-202ENST00000611852 HPGDSO60760 199 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 APOA1P02647 267 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 GSTT2P0CG29 244 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 GSTT2BP0CG30 244 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 ZBTB25P24278 435 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 LY6EQ16553 131 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 CCDC144NLQ6NUI1 221 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 MZT2AQ6P582 158 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 DTX3Q8N9I9 347 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 ST6GALNAC6Q969X2 333 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 ABHD14AQ9BUJ0 271 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 OR1A1Q9P1Q5 309 aa13.32□□□□□ -0.28
CCDC28A-202ENST00000611852 IGKV1D-8A0A087WSZ0 117 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 HSPA12AO43301 675 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 PTHLHP12272 177 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 ELK1P19419 428 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 CEACAM6P40199 344 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 MNDAP41218 407 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 RAB7AP51149 207 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 ZNF137PP52743 207 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 RPL15P61313 204 aaKnown RBP13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 ACTG1P63261 375 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 TMEM69Q5SWH9 247 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 OR2AK2Q8NG84 335 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 ST6GALNAC5Q9BVH7 336 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 TCF19Q9Y242 345 aa13.31□□□□□ -0.28
CCDC28A-202ENST00000611852 A0A1W2PPI3 338 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 HSD17B6O14756 317 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 IL3RAP26951 378 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 BRS3P32247 399 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 ARHGDIBP52566 201 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 TAS2R20P59543 309 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 ZNF816Q0VGE8 651 aaPredicted RBP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 IGSF11Q5DX21 431 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 CCBE1Q6UXH8 406 aaPredicted RBP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 LYG1Q8N1E2 194 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 TAF15Q92804 592 aaKnown RBP eCLIP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 CABLES2Q9BTV7 478 aa13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 C6orf62Q9GZU0 229 aaPredicted RBP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 NXF2Q9GZY0 626 aaKnown RBP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 PARP12Q9H0J9 701 aaKnown RBP13.3□□□□□ -0.28
CCDC28A-202ENST00000611852 TMEM89A2RUT3 159 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 A6NDX4 124 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 DIRAS3O95661 229 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 GAPDHP04406 335 aaKnown RBP13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 HKR1P10072 659 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 ODF3L1Q8IXM7 274 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 OR8H3Q8N146 312 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 S100ZQ8WXG8 99 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 IFI27L2Q9H2X8 130 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 TRBV6-7A0A0A0MS04 114 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 ITGB1BP1O14713 200 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 TIMM23O14925 209 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 BET1O15155 118 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 ST8SIA5O15466 376 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 CRYBA1P05813 215 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 CD24P25063 80 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 S100A5P33763 92 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 REG1BP48304 166 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 LIAT1Q6ZQX7 453 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 OR6Q1Q8NGQ2 317 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 RTN4IP1Q8WWV3 396 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 CFHR4Q92496 578 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 GCDHQ92947 438 aaPredicted RBP13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 AGMATQ9BSE5 352 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 TOLLIPQ9H0E2 274 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 RDH8Q9NYR8 311 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 C1RLQ9NZP8 487 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 PITPNC1Q9UKF7 332 aa13.29□□□□□ -0.28
CCDC28A-202ENST00000611852 IGHV1-3A0A0C4DH29 117 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 FAM90A9PA6NNJ1 464 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 CHST1O43916 411 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 HLA-DQB1P01920 261 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 RELBQ01201 579 aa13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 HABP2Q14520 560 aaPredicted RBP13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 DHRS7BQ6IAN0 325 aaPredicted RBP13.28□□□□□ -0.28
CCDC28A-202ENST00000611852 TMEM219Q86XT9 240 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 61.3 ms