RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PARLQ9H300 379 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 NAT8Q9UHE5 227 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 KIAA1324LA8MWY0 1029 aaPredicted RBP15.62■□□□□ 0.09
UPF1-210ENST00000600689 PFN1P07737 140 aaKnown RBP15.62■□□□□ 0.09
UPF1-210ENST00000600689 NUTF2P61970 127 aaKnown RBP15.62■□□□□ 0.09
UPF1-210ENST00000600689 PRDX4Q13162 271 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 ADGRG7Q96K78 797 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 FGF23Q9GZV9 251 aaPredicted RBP15.62■□□□□ 0.09
UPF1-210ENST00000600689 MTCH1Q9NZJ7 389 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 RNF150Q9ULK6 438 aa15.62■□□□□ 0.09
UPF1-210ENST00000600689 C1QTNF9BB2RNN3 333 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 CEACAM1P13688 526 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 OR10J5Q8NHC4 309 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 TMEM204Q9BSN7 226 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 NBEAQ8NFP9 2946 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 TNRC6BQ9UPQ9 1833 aaKnown RBP15.61■□□□□ 0.09
UPF1-210ENST00000600689 CARD18P57730 90 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 MEF2BQ02080 365 aaPredicted RBP15.61■□□□□ 0.09
UPF1-210ENST00000600689 LPAL2Q16609 132 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 FAM78BQ5VT40 261 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 BTNL3Q6UXE8 466 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 PNPLA5Q7Z6Z6 429 aaPredicted RBP15.61■□□□□ 0.09
UPF1-210ENST00000600689 MRGPRGQ86SM5 289 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 TMEM256Q8N2U0 113 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 IL22RA2Q969J5 263 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 TP53TG5Q9Y2B4 290 aa15.61■□□□□ 0.09
UPF1-210ENST00000600689 OR51G1Q8NGK1 321 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 RNF138Q8WVD3 245 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 OR51I2Q9H344 312 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 IGLV3-32A0A0A0MS00 114 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 C5orf49A4QMS7 147 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 TRAPPC2LH3BP13 241 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 RBMXL2O75526 392 aaKnown RBP15.6■□□□□ 0.09
UPF1-210ENST00000600689 IFNA1P01562 189 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 IGKV1-39P01597 117 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 IGKV1D-39P04432 117 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 TNFRSF9Q07011 255 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 ASCL4Q6XD76 172 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 OR5D13Q8NGL4 314 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 PSMF1Q92530 271 aa15.6■□□□□ 0.09
UPF1-210ENST00000600689 H0Y980 276 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 MKRN2OSH3BPM6 223 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 PAGE4O60829 102 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 FGF5P12034 268 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 LIFP15018 202 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 FOXO1Q12778 655 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 TCEAL6Q6IPX3 200 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 FAM53AQ6NSI3 398 aaPredicted RBP15.59■□□□□ 0.09
UPF1-210ENST00000600689 UBALD2Q8IYN6 164 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 PTRH2Q9Y3E5 179 aaKnown RBP15.59■□□□□ 0.09
UPF1-210ENST00000600689 VAMP5O95183 116 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 S100GP29377 79 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 PCOLCEQ15113 449 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 OR8B8Q15620 311 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 WIPI1Q5MNZ9 446 aaPredicted RBP15.59■□□□□ 0.09
UPF1-210ENST00000600689 TMEM42Q69YG0 159 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 RAB24Q969Q5 203 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 NEU1Q99519 415 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 PLSCR2Q9NRY7 297 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 LOC102725191A0A1B0GVB3 256 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 GRIFINA4D1Z8 144 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 UMODP07911 640 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 FOXG1P55316 489 aaPredicted RBP15.59■□□□□ 0.09
UPF1-210ENST00000600689 SLC38A11Q08AI6 406 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 ACSM6Q6P461 480 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 TCF23Q7RTU1 214 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 TMEM18Q96B42 140 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 RAB40CQ96S21 281 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 TCFL5Q9UL49 500 aa15.59■□□□□ 0.09
UPF1-210ENST00000600689 ZNF320A2RRD8 509 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 CLEC18AA5D8T8 446 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 NUPR1O60356 82 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 KRASP01116 189 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 NGFP01138 241 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 TMEM41BQ5BJD5 291 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 MKXQ8IYA7 352 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 CLEC18CQ8NCF0 446 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 SDSLQ96GA7 329 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 NOL4LQ96MY1 436 aaPredicted RBP15.58■□□□□ 0.08
UPF1-210ENST00000600689 ZNF552Q9H707 407 aaPredicted RBP15.58■□□□□ 0.08
UPF1-210ENST00000600689 PRRC2CQ9Y520 2896 aaKnown RBP15.58■□□□□ 0.08
UPF1-210ENST00000600689 OR6C6A6NF89 314 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 DKK1O94907 266 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 IGKV1-5P01602 117 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 GYPAP02724 150 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 TDGF1P13385 188 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 PSMB3P49720 205 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 MRPL21Q7Z2W9 205 aaKnown RBP15.58■□□□□ 0.08
UPF1-210ENST00000600689 OR2T10Q8NGZ9 312 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 CLN8Q9UBY8 286 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 C19orf25Q9UFG5 118 aaPredicted RBP15.58■□□□□ 0.08
UPF1-210ENST00000600689 AHCTF1Q8WYP5 2266 aa15.58■□□□□ 0.08
UPF1-210ENST00000600689 KIR2DS1A0A191URI9 304 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 RFPL3SP0C7P2 107 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 KIR2DS4P43632 304 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 HBG1P69891 147 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 HBG2P69892 147 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 KIR2DS1Q14954 304 aa15.57■□□□□ 0.08
UPF1-210ENST00000600689 TAF15Q92804 592 aaKnown RBP eCLIP15.57■□□□□ 0.08
UPF1-210ENST00000600689 WDR61Q9GZS3 305 aaKnown RBP15.57■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms